Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AVM03_RS02950 Genome accession   NZ_CP013727
Coordinates   616988..618238 (+) Length   416 a.a.
NCBI ID   WP_052585947.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 611988..623238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS02920 (AVM03_02915) yfmH 612071..613357 (+) 1287 WP_014305020.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AVM03_RS02925 (AVM03_02920) ymfI 613416..614144 (+) 729 WP_014305021.1 elongation factor P 5-aminopentanone reductase -
  AVM03_RS02930 (AVM03_02925) - 614220..614477 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  AVM03_RS02935 (AVM03_02930) - 614605..615396 (+) 792 WP_003154149.1 DUF3388 domain-containing protein -
  AVM03_RS02940 (AVM03_02935) - 615415..616314 (+) 900 WP_015388222.1 helix-turn-helix domain-containing protein -
  AVM03_RS02945 (AVM03_02940) pgsA 616389..616970 (+) 582 WP_058906023.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AVM03_RS02950 (AVM03_02945) cinA 616988..618238 (+) 1251 WP_052585947.1 competence/damage-inducible protein A Machinery gene
  AVM03_RS02955 (AVM03_02950) recA 618409..619452 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  AVM03_RS02960 (AVM03_02955) - 619622..620803 (+) 1182 WP_015388220.1 serine hydrolase domain-containing protein -
  AVM03_RS02965 (AVM03_02960) rny 621096..622655 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45136.47 Da        Isoelectric Point: 5.3789

>NTDB_id=164458 AVM03_RS02950 WP_052585947.1 616988..618238(+) (cinA) [Bacillus amyloliquefaciens strain MBE1283]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISTEGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=164458 AVM03_RS02950 WP_052585947.1 616988..618238(+) (cinA) [Bacillus amyloliquefaciens strain MBE1283]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCGGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAACTGGCGGAAATCGGTGTAAACGTGTTTTACCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAACCGCTGCTTCTTAAAAAGCTTGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGAGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTCGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATATCAACGGAAGGAAAAGAAGAGGTGCACGAATTTCACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

41.176

93.99

0.387

Multiple sequence alignment