Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AVM03_RS02565 Genome accession   NZ_CP013727
Coordinates   540577..541356 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 535577..546356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS02545 (AVM03_02540) trmFO 536264..537571 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AVM03_RS02550 (AVM03_02545) xerC 537641..538558 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  AVM03_RS02555 (AVM03_02550) hslV 538574..539119 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  AVM03_RS02560 (AVM03_02555) hslU 539136..540539 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  AVM03_RS02565 (AVM03_02560) codY 540577..541356 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AVM03_RS02570 (AVM03_02565) flgB 541710..542099 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  AVM03_RS02575 (AVM03_02570) flgC 542099..542551 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  AVM03_RS02580 (AVM03_02575) fliE 542562..542882 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  AVM03_RS02585 (AVM03_02580) fliF 542925..544535 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  AVM03_RS02590 (AVM03_02585) fliG 544548..545564 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  AVM03_RS02595 (AVM03_02590) fliH 545557..546312 (+) 756 WP_057080704.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=164457 AVM03_RS02565 WP_003154263.1 540577..541356(+) (codY) [Bacillus amyloliquefaciens strain MBE1283]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=164457 AVM03_RS02565 WP_003154263.1 540577..541356(+) (codY) [Bacillus amyloliquefaciens strain MBE1283]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment