Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AUC63_RS06040 Genome accession   NZ_CP013726
Coordinates   1346651..1348465 (+) Length   604 a.a.
NCBI ID   WP_010372513.1    Uniprot ID   -
Organism   Weissella cibaria strain CMS2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1341651..1353465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC63_RS06015 (AUC63_01225) - 1341901..1342218 (+) 318 WP_010372498.1 PTS sugar transporter subunit IIB -
  AUC63_RS06020 (AUC63_01226) - 1342264..1342587 (+) 324 WP_010372502.1 PTS lactose/cellobiose transporter subunit IIA -
  AUC63_RS06025 (AUC63_01227) - 1342593..1344044 (+) 1452 WP_010372504.1 6-phospho-beta-glucosidase -
  AUC63_RS06030 (AUC63_01228) - 1344111..1345475 (+) 1365 WP_010372507.1 PTS sugar transporter subunit IIC -
  AUC63_RS06035 (AUC63_01229) - 1345673..1346611 (+) 939 WP_157725485.1 competence protein CoiA -
  AUC63_RS06040 (AUC63_01230) pepF 1346651..1348465 (+) 1815 WP_010372513.1 oligoendopeptidase F Regulator
  AUC63_RS06045 (AUC63_01231) - 1348555..1349274 (-) 720 WP_010372516.1 MIP/aquaporin family protein -
  AUC63_RS06050 (AUC63_01232) - 1349582..1349971 (+) 390 WP_010372520.1 DUF948 domain-containing protein -
  AUC63_RS06055 (AUC63_01233) - 1349987..1350559 (+) 573 WP_010372524.1 hypothetical protein -
  AUC63_RS06060 (AUC63_01234) ccpA 1350618..1351619 (-) 1002 WP_010373031.1 catabolite control protein A -
  AUC63_RS06065 (AUC63_01235) - 1351871..1352971 (+) 1101 WP_010373028.1 M24 family metallopeptidase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67749.61 Da        Isoelectric Point: 4.2890

>NTDB_id=164435 AUC63_RS06040 WP_010372513.1 1346651..1348465(+) (pepF) [Weissella cibaria strain CMS2]
MAKELPLRDALPESMTWNLQTIFASDEAWEDAFEELADRLESADFFVQSATTSGTDLYNALQYGLGVMRDLEKLYVYASM
KSDQDTANAYYQGLSNRAEALAARVSAAIAFFDPAVLSLSEAELTAFFEAEPKLGAYKHYFESILTQQGHVLTPDQEALL
AAAGDVFGASERTFGVLDNADIKFEAVANEDGELETLSNGVYSRLLESTDPEVRRNAFQTFYKSYVSLENTFASLIASHV
KGHNFMAAVHNYDNAREAALAGNHVPEVVYDTLVAEVNEALPLLHRYVALRKQLLGLDELHSYDLYTPILGEPDFTIDYE
SAQAEALKALAPLGEDYLEVVNTAFDNRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVTDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAQGVPL
TADVLDEAYGELNRRYYGPALTFDDEIAHEWERIPHFYYNFYVFQYSTGFAAATAMADKILTEGAPAVAAYKEYLKAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEQRLNEFEALVAELAAE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=164435 AUC63_RS06040 WP_010372513.1 1346651..1348465(+) (pepF) [Weissella cibaria strain CMS2]
ATGGCCAAAGAATTACCATTACGAGATGCATTGCCTGAGTCAATGACTTGGAATTTGCAGACAATTTTTGCTTCTGATGA
AGCGTGGGAAGATGCCTTTGAAGAATTGGCCGATCGGTTAGAGTCAGCGGATTTCTTCGTCCAATCAGCAACGACGTCTG
GTACAGATTTGTACAATGCGTTGCAATACGGTTTGGGTGTGATGCGTGACTTAGAAAAGCTGTATGTCTATGCTTCAATG
AAGTCAGACCAAGATACAGCCAACGCTTATTATCAAGGGTTGAGCAATCGAGCTGAAGCCTTGGCAGCACGTGTTTCGGC
AGCCATTGCATTCTTTGATCCAGCTGTTTTGTCACTTTCAGAAGCTGAATTAACGGCCTTTTTTGAAGCAGAGCCTAAGC
TGGGGGCGTATAAGCATTACTTCGAGAGCATCTTGACGCAACAAGGTCACGTCTTAACGCCAGACCAAGAAGCATTGTTA
GCTGCTGCTGGGGATGTTTTTGGGGCGTCAGAACGGACATTTGGTGTGTTGGATAATGCCGATATTAAGTTTGAAGCTGT
TGCCAACGAAGATGGTGAACTGGAGACGTTGTCAAACGGTGTCTATTCACGTTTATTGGAGTCGACTGACCCGGAAGTAC
GTCGAAATGCTTTCCAAACGTTCTACAAGTCATATGTCTCACTTGAAAATACCTTTGCATCTTTGATTGCCAGTCACGTG
AAGGGTCATAACTTTATGGCGGCGGTTCACAACTATGATAATGCGCGTGAAGCTGCTTTAGCTGGTAACCATGTGCCAGA
AGTGGTGTACGATACATTGGTGGCGGAAGTAAATGAAGCGTTGCCGTTGTTGCATCGTTACGTTGCCCTCCGAAAGCAAT
TGTTGGGCTTGGACGAATTGCACTCATACGATTTGTATACCCCAATTTTGGGCGAACCTGACTTTACGATTGATTACGAA
TCTGCCCAGGCTGAAGCATTGAAGGCGTTGGCACCATTGGGCGAAGATTATCTGGAAGTTGTCAATACAGCCTTTGATAA
TCGTTGGATTGATGTCATTGAGAATAAGGGCAAGCGTTCAGGAGCCTACTCGGGCGGTTCATATGATACAAATCCATTCA
TTTTGCTGAACTGGGTTGATAACCTGAACAATTTGAGCACTTTAGTTCACGAAATGGGCCACTCAGTGCACTCATATTTG
ACTCGTCAAAATCAGCCTTACCACTACGGCGATTACCCAATCTTCTTGGCTGAAATTGCGTCAACGACGAACGAAAACTT
GTTGACGGATTACTTGCTTAAGACGGTGACGGATAAGAAGTTGCGTGCATATATCTTGAATCAGTACTTGGATGGTGTGA
AGGGAACGGTCTTCCGTCAAACCCAATTTGCAGAGTTTGAGCAATGGATGCACGTGACGGATGCGCAAGGCGTGCCATTG
ACTGCTGATGTTTTGGATGAGGCCTATGGTGAACTTAACCGACGTTACTACGGCCCAGCCTTGACGTTTGATGATGAAAT
TGCGCACGAGTGGGAGCGTATTCCACACTTCTACTACAACTTCTACGTGTTCCAATACAGTACTGGTTTTGCTGCTGCGA
CGGCAATGGCGGATAAGATTTTGACTGAAGGGGCACCGGCTGTGGCGGCTTACAAGGAATACTTGAAGGCCGGATCATCT
GCATTCCCAATCGATGTGATGAAGAAGGCCGGGCTTGATATGACTAAGCCAGATTACTTGCGTGATACATTCAAAGTGTT
CGAACAGCGCTTGAACGAATTTGAAGCGTTGGTGGCAGAATTAGCTGCTGAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-184)

Peptidase family M3 (Peptidase_M3)

(205-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.299

97.848

0.522

Multiple sequence alignment