Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AVJ22_RS09005 Genome accession   NZ_CP013714
Coordinates   1846450..1846869 (-) Length   139 a.a.
NCBI ID   WP_065338440.1    Uniprot ID   -
Organism   Staphylococcus equorum strain C2014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1841450..1851869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVJ22_RS08980 (AVJ22_08965) thiE 1841949..1842587 (-) 639 WP_065338436.1 thiamine phosphate synthase -
  AVJ22_RS08985 (AVJ22_08970) thiM 1842587..1843378 (-) 792 WP_065339164.1 hydroxyethylthiazole kinase -
  AVJ22_RS08990 (AVJ22_08975) thiD 1843371..1844192 (-) 822 WP_065338437.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AVJ22_RS08995 (AVJ22_08980) tenA 1844185..1844874 (-) 690 WP_065338438.1 thiaminase II -
  AVJ22_RS14940 - 1845115..1845240 (+) 126 WP_257784500.1 hypothetical protein -
  AVJ22_RS09000 (AVJ22_08985) - 1845266..1845967 (-) 702 WP_065338439.1 transglycosylase family protein -
  AVJ22_RS09005 (AVJ22_08990) ssb 1846450..1846869 (-) 420 WP_065338440.1 single-stranded DNA-binding protein Machinery gene
  AVJ22_RS09010 (AVJ22_08995) - 1847060..1847500 (+) 441 WP_065338441.1 YwpF-like family protein -
  AVJ22_RS09015 (AVJ22_09000) fabZ 1847569..1848009 (-) 441 WP_065339165.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AVJ22_RS09020 (AVJ22_09005) murA 1848067..1849332 (-) 1266 WP_065338442.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AVJ22_RS09025 (AVJ22_09010) - 1849439..1849672 (-) 234 WP_002507083.1 DUF1146 family protein -
  AVJ22_RS09030 (AVJ22_09015) - 1850001..1850405 (-) 405 WP_065338443.1 F0F1 ATP synthase subunit epsilon -
  AVJ22_RS09035 (AVJ22_09020) atpD 1850425..1851837 (-) 1413 WP_002507081.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16331.56 Da        Isoelectric Point: 4.7429

>NTDB_id=164294 AVJ22_RS09005 WP_065338440.1 1846450..1846869(-) (ssb) [Staphylococcus equorum strain C2014]
MINNIVIVGRLTKDPKIYEKEEKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFGKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSELYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=164294 AVJ22_RS09005 WP_065338440.1 1846450..1846869(-) (ssb) [Staphylococcus equorum strain C2014]
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTATGAAAAGGAGGAGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTATATTGTAAAGCATTTG
GTAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAACTTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

61.594

99.281

0.612
  ssb Staphylococcus aureus MW2

60.87

99.281

0.604

Multiple sequence alignment