Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   AVJ22_RS08380 Genome accession   NZ_CP013714
Coordinates   1717254..1718297 (-) Length   347 a.a.
NCBI ID   WP_065338347.1    Uniprot ID   -
Organism   Staphylococcus equorum strain C2014     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1712254..1723297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVJ22_RS08350 (AVJ22_08335) - 1712695..1713933 (-) 1239 WP_065338343.1 aminopeptidase -
  AVJ22_RS08355 (AVJ22_08340) - 1713949..1714131 (-) 183 WP_404969092.1 DUF1128 family protein -
  AVJ22_RS08360 (AVJ22_08345) - 1714287..1714751 (+) 465 WP_065338345.1 low molecular weight protein-tyrosine-phosphatase -
  AVJ22_RS08365 (AVJ22_08350) - 1714758..1715042 (+) 285 WP_002507208.1 hypothetical protein -
  AVJ22_RS08370 (AVJ22_08355) - 1715273..1716445 (+) 1173 WP_065338346.1 YihY/virulence factor BrkB family protein -
  AVJ22_RS08375 (AVJ22_08360) vraR 1716635..1717264 (-) 630 WP_002507206.1 response regulator transcription factor Regulator
  AVJ22_RS08380 (AVJ22_08365) vraS 1717254..1718297 (-) 1044 WP_065338347.1 sensor histidine kinase Regulator
  AVJ22_RS08385 (AVJ22_08370) liaF 1718294..1718995 (-) 702 WP_002507204.1 cell wall-active antibiotics response protein LiaF -
  AVJ22_RS08390 (AVJ22_08375) - 1719012..1719398 (-) 387 WP_002507203.1 hypothetical protein -
  AVJ22_RS08395 (AVJ22_08380) map 1719503..1720255 (-) 753 WP_002507202.1 type I methionyl aminopeptidase -
  AVJ22_RS08400 (AVJ22_08385) - 1720436..1721422 (+) 987 WP_065338348.1 FUSC family protein -
  AVJ22_RS08405 (AVJ22_08390) - 1721522..1722241 (-) 720 WP_002507200.1 type 1 glutamine amidotransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39973.32 Da        Isoelectric Point: 5.8194

>NTDB_id=164292 AVJ22_RS08380 WP_065338347.1 1717254..1718297(-) (vraS) [Staphylococcus equorum strain C2014]
MNHYIRAIGSMLILVYSTFFALFFIDKVFVNIVYFQGMFYTQIFGIPVLLFLNLLVIFLCIIVGSVLAYKINQQNHWLQD
QIERSIEGQTVGINDQNIELYNETIELYQTLVPLNQEVHKLRMKTQNLTNESYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETELEAPLDQQIPILEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVVDLKKKVPMKVVHDI
EEFEVPKGIEDHLFRITQEALSNTLRHSKGTKVTVELFNMANYLLLRIQDNGKGFNVDDKVEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEDSHDD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=164292 AVJ22_RS08380 WP_065338347.1 1717254..1718297(-) (vraS) [Staphylococcus equorum strain C2014]
ATGAATCACTACATAAGAGCAATAGGATCCATGTTGATATTAGTTTATAGCACATTTTTTGCTCTATTTTTTATCGATAA
AGTATTTGTAAACATAGTATATTTTCAAGGTATGTTTTATACACAAATTTTTGGAATACCAGTTTTACTATTTTTAAACT
TATTAGTTATTTTTCTTTGTATTATTGTAGGATCGGTATTAGCATATAAAATAAATCAACAAAATCACTGGTTACAAGAC
CAAATAGAACGTTCTATTGAAGGTCAAACAGTGGGTATTAATGACCAAAATATTGAATTATATAATGAAACAATTGAATT
GTATCAAACGTTAGTTCCATTAAATCAAGAAGTTCACAAATTACGCATGAAAACGCAAAACTTAACAAATGAATCATATA
ATATAAATGATGTGAAAGTTAAAAAGATTATAGAAGATGAACGACAAAGGCTTGCACGTGAGTTACACGATTCAGTAAGT
CAGCAATTATTTGCAGCGAGTATGATGCTTTCAGCTATTAAAGAAACAGAATTAGAAGCACCTTTAGATCAACAAATTCC
GATATTAGAAAAAATGGTACAAGATTCTCAGTTAGAGATGAGAGCTTTACTATTACATTTAAGACCTATTGGATTAAAAG
ACAAATCATTAGGTGAAGGTATTAAAGATTTAGTCGTTGATTTAAAGAAAAAAGTACCTATGAAAGTTGTACATGATATT
GAAGAATTTGAAGTACCTAAAGGTATTGAAGATCATTTGTTCAGAATTACGCAAGAAGCCTTATCTAATACTTTGAGACA
TTCAAAAGGTACTAAAGTAACAGTAGAATTGTTTAATATGGCAAATTACTTATTATTACGCATTCAAGACAATGGTAAAG
GGTTCAATGTTGATGATAAGGTAGAACAAAGTTATGGTTTAAAAAACATGAGAGAACGTGCGCTTGAAATTGGTGCGACG
TTTCATATTGTTTCTTTACCAGATTCAGGTACAAGAATTGAAGTAAAGGCACCATTAAATAAGGAGGATTCACATGACGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

87.896

100

0.879


Multiple sequence alignment