Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AVJ22_RS08375 Genome accession   NZ_CP013714
Coordinates   1716635..1717264 (-) Length   209 a.a.
NCBI ID   WP_002507206.1    Uniprot ID   -
Organism   Staphylococcus equorum strain C2014     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711635..1722264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVJ22_RS08345 (AVJ22_08330) - 1712079..1712600 (-) 522 WP_002511389.1 acyl-CoA thioesterase -
  AVJ22_RS08350 (AVJ22_08335) - 1712695..1713933 (-) 1239 WP_065338343.1 aminopeptidase -
  AVJ22_RS08355 (AVJ22_08340) - 1713949..1714131 (-) 183 WP_404969092.1 DUF1128 family protein -
  AVJ22_RS08360 (AVJ22_08345) - 1714287..1714751 (+) 465 WP_065338345.1 low molecular weight protein-tyrosine-phosphatase -
  AVJ22_RS08365 (AVJ22_08350) - 1714758..1715042 (+) 285 WP_002507208.1 hypothetical protein -
  AVJ22_RS08370 (AVJ22_08355) - 1715273..1716445 (+) 1173 WP_065338346.1 YihY/virulence factor BrkB family protein -
  AVJ22_RS08375 (AVJ22_08360) vraR 1716635..1717264 (-) 630 WP_002507206.1 response regulator transcription factor Regulator
  AVJ22_RS08380 (AVJ22_08365) vraS 1717254..1718297 (-) 1044 WP_065338347.1 sensor histidine kinase Regulator
  AVJ22_RS08385 (AVJ22_08370) liaF 1718294..1718995 (-) 702 WP_002507204.1 cell wall-active antibiotics response protein LiaF -
  AVJ22_RS08390 (AVJ22_08375) - 1719012..1719398 (-) 387 WP_002507203.1 hypothetical protein -
  AVJ22_RS08395 (AVJ22_08380) map 1719503..1720255 (-) 753 WP_002507202.1 type I methionyl aminopeptidase -
  AVJ22_RS08400 (AVJ22_08385) - 1720436..1721422 (+) 987 WP_065338348.1 FUSC family protein -
  AVJ22_RS08405 (AVJ22_08390) - 1721522..1722241 (-) 720 WP_002507200.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23734.25 Da        Isoelectric Point: 4.7666

>NTDB_id=164291 AVJ22_RS08375 WP_002507206.1 1716635..1717264(-) (vraR) [Staphylococcus equorum strain C2014]
MTIKVLFVDDHEMVRIGISSYLSTQPDIDIVGEGQSGKDAIEKAHQLNPDLILMDLLMDDMDGVDATEQIKKDLPHIKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYKNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=164291 AVJ22_RS08375 WP_002507206.1 1716635..1717264(-) (vraR) [Staphylococcus equorum strain C2014]
ATGACGATTAAAGTTTTGTTTGTTGATGATCATGAAATGGTTCGAATTGGAATTTCTAGTTACTTATCTACACAGCCAGA
TATTGATATTGTAGGGGAAGGTCAGTCAGGAAAAGATGCGATTGAAAAGGCTCATCAACTAAATCCAGATTTAATCTTAA
TGGACTTGCTTATGGACGATATGGATGGTGTCGATGCTACCGAGCAAATTAAAAAAGACTTACCCCATATTAAAGTTGTA
ATGTTAACAAGTTACATTGAAGATAATGAAGTATATCGTGCTTTAGATTCTGGTGTAGACAGCTATATTTTGAAAACGAC
TAGTGCTAGTGATATAGCCGAGGCTATTCGTAAAACGTATAAAAATGAGTCTGTATTTGAAGCTGAAGTGCTTGTGAAGA
TGAGAAATAGAATGAAACAACGTGCCGAATTATATGAAATGTTAACGGAAAGAGAAATGGAAATTCTATTACTTATCGCA
AAAGGTTACTCAAACCAAGAAATTGCGAGTGCATCACACATAACGATTAAAACAGTAAAAACACATGTAAGTAATATATT
AAGTAAATTAGAAGTACAAGATAGAACACAAGCAGTTATTTATGCATTCCAGCATAATTTAATACAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

88.517

100

0.885

Multiple sequence alignment