Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   AVJ22_RS03755 Genome accession   NZ_CP013714
Coordinates   786800..787363 (+) Length   187 a.a.
NCBI ID   WP_002508070.1    Uniprot ID   A0AAP7LV23
Organism   Staphylococcus equorum strain C2014     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 781800..792363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVJ22_RS03730 (AVJ22_03725) - 782500..784008 (+) 1509 WP_065337671.1 bifunctional metallophosphatase/5'-nucleotidase -
  AVJ22_RS03735 (AVJ22_03730) - 784245..784847 (-) 603 WP_065337672.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  AVJ22_RS03740 (AVJ22_03735) - 784854..785039 (-) 186 WP_065337673.1 YkvS family protein -
  AVJ22_RS03745 (AVJ22_03740) - 785240..786229 (+) 990 WP_065337674.1 lipoate--protein ligase -
  AVJ22_RS03750 (AVJ22_03745) - 786329..786547 (-) 219 WP_002508071.1 IDEAL domain-containing protein -
  AVJ22_RS03755 (AVJ22_03750) comK/comK1 786800..787363 (+) 564 WP_002508070.1 competence protein ComK Regulator
  AVJ22_RS03770 (AVJ22_03765) - 787801..788343 (-) 543 WP_065337675.1 recombinase family protein -
  AVJ22_RS03775 (AVJ22_03770) - 788452..789903 (+) 1452 WP_065337676.1 SulP family inorganic anion transporter -
  AVJ22_RS03780 (AVJ22_03775) - 789917..790330 (+) 414 WP_065337677.1 universal stress protein -
  AVJ22_RS03785 (AVJ22_03780) - 790417..790551 (-) 135 WP_065337678.1 alcohol dehydrogenase -
  AVJ22_RS03790 (AVJ22_03785) - 790565..791437 (-) 873 Protein_745 permease -
  AVJ22_RS03795 (AVJ22_03790) - 791526..791846 (-) 321 WP_065337679.1 ArsR/SmtB family transcription factor -
  AVJ22_RS03800 (AVJ22_03795) - 791996..792310 (+) 315 WP_065337680.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22058.46 Da        Isoelectric Point: 9.1458

>NTDB_id=164276 AVJ22_RS03755 WP_002508070.1 786800..787363(+) (comK/comK1) [Staphylococcus equorum strain C2014]
MIQQYIIKKGDMALQPCNLSIGLNEGTCVLKYKEERDIVKERTHKIIDRSCRFYGSSYVFKKEDTMRITGINSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVQTIRALKDKKCKITFVDNQTIVVNISAHSMHHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKPQLNIYEALAKYSLFENK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=164276 AVJ22_RS03755 WP_002508070.1 786800..787363(+) (comK/comK1) [Staphylococcus equorum strain C2014]
ATGATTCAACAATACATTATTAAAAAAGGTGATATGGCTCTTCAACCTTGTAATTTATCTATAGGACTAAATGAAGGTAC
TTGTGTATTAAAGTATAAGGAGGAGCGTGATATCGTAAAGGAACGAACACATAAGATTATAGATCGTTCATGTAGATTTT
ATGGTAGCAGCTATGTATTTAAAAAAGAAGATACAATGAGAATTACAGGTATTAATAGTAAACCCCCGATATTATTCACT
CCATTATTTCCTACTTATTTCTTTCCCACACATTCAGACCGAAAAGAAGAAAACACTTGGATCAATATTCATTATGTACA
AACCATAAGAGCTTTAAAAGATAAAAAATGTAAAATCACATTTGTCGATAACCAGACTATAGTTGTTAATATTTCAGCGC
ACAGTATGCATCATCAATACTTAAATGGTATATATTATTACTATATGATGGACAGAGCTGCTAGGGTGGCTACTTTTGAT
CCTGAATCTCCTATAGACTACACGAAACCGCAATTAAATATTTATGAAGCATTAGCAAAATACTCTCTGTTTGAAAATAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

51.913

97.861

0.508
  comK/comK1 Staphylococcus aureus N315

51.913

97.861

0.508

Multiple sequence alignment