Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   AU077_RS10005 Genome accession   NZ_CP013688
Coordinates   1966760..1967992 (-) Length   410 a.a.
NCBI ID   WP_307777631.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1961760..1972992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS09980 (AU077_09980) - 1962066..1962260 (-) 195 WP_014293700.1 DUF951 domain-containing protein -
  AU077_RS09985 (AU077_09985) - 1962272..1962930 (-) 659 Protein_1981 diacylglycerol/lipid kinase family protein -
  AU077_RS09990 (AU077_09990) dnaN 1963061..1964197 (-) 1137 WP_014293698.1 DNA polymerase III subunit beta -
  AU077_RS09995 (AU077_09995) dnaA 1964355..1965710 (-) 1356 WP_014293697.1 chromosomal replication initiator protein DnaA -
  AU077_RS10000 (AU077_10000) spo0J 1965914..1966690 (-) 777 WP_058621987.1 ParB/RepB/Spo0J family partition protein Regulator
  AU077_RS10005 (AU077_10005) htrA 1966760..1967992 (-) 1233 WP_307777631.1 S1C family serine protease Regulator
  AU077_RS10010 (AU077_10010) rlmH 1968237..1968716 (+) 480 WP_014295514.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  AU077_RS10955 - 1969174..1970193 (-) 1020 Protein_1987 IS30 family transposase -

Sequence


Protein


Download         Length: 410 a.a.        Molecular weight: 42575.08 Da        Isoelectric Point: 4.0556

>NTDB_id=164083 AU077_RS10005 WP_307777631.1 1966760..1967992(-) (htrA) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MPKFNYKNWLKPLGVILVGFIAGVAGTILVLNMAGISITNVGGSSTKTTTSSVSYSNSNDTTKAVEKVQDAVVSVINYKS
DSSSSTSDLYNQFFGNDSDSSSDSSSTDDLTVYSEGSGVIYKKDGDSAYVVTNNHVIDGAEQIEIMLADGTKVVGELVGA
DTYSDIAVVKISSDNVSTVAEFADSDKLTVGETAIAIGSPLGTEYANSVTQGIVSSLSRTVTMTNDDGKTISTNAIQTDA
AINPGNSGGALINIEGQVIGINSSKISSTSSSGEFVEGMGFAIPSNDVVSIINQLEENGQVIRPALGISMVNLSDLSTNA
IAQLNIPTSVTSGVVVAAVQSGMPAEGNLEQYDVITAIDDKEVTSTSDLQSILYTHSVGDSVKVTFYRGTDKKTATIKLT
KTTQDLSSSN

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=164083 AU077_RS10005 WP_307777631.1 1966760..1967992(-) (htrA) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
TTGCCAAAATTTAATTACAAAAATTGGTTAAAACCATTGGGTGTCATTTTAGTCGGCTTTATAGCTGGTGTCGCAGGTAC
AATACTCGTCCTAAATATGGCAGGTATTTCAATCACTAACGTCGGTGGTTCAAGTACAAAAACAACAACAAGTAGCGTAA
GCTATTCTAACTCTAACGATACAACAAAAGCTGTGGAAAAAGTTCAAGACGCAGTTGTATCTGTTATTAACTACAAATCA
GACTCGTCGTCTTCTACAAGTGACCTCTACAATCAATTCTTTGGCAATGATTCAGACAGTAGTAGCGATTCAAGCTCTAC
AGATGATTTGACTGTTTACAGTGAAGGTTCTGGGGTTATTTACAAAAAAGATGGTGATTCTGCTTATGTCGTCACTAACA
ATCACGTTATTGATGGGGCTGAACAAATTGAAATCATGCTTGCTGATGGAACAAAAGTTGTTGGTGAGCTAGTCGGAGCA
GATACTTATTCAGATATTGCCGTTGTCAAAATTTCTTCTGACAACGTATCTACAGTTGCTGAATTTGCCGATTCTGATAA
ATTAACTGTCGGTGAAACTGCTATCGCTATTGGTAGCCCACTCGGTACTGAATATGCTAACTCTGTAACACAAGGTATTG
TCTCAAGTCTTAGCCGTACAGTAACCATGACAAATGATGATGGTAAAACTATCTCAACAAATGCTATCCAAACGGATGCA
GCGATTAACCCAGGTAACTCTGGTGGTGCTTTAATTAACATTGAAGGACAAGTTATCGGTATCAATTCAAGTAAGATTTC
ATCTACATCAAGTTCTGGTGAATTTGTCGAAGGTATGGGATTTGCCATTCCATCTAACGATGTTGTATCCATTATTAACC
AATTGGAAGAAAATGGGCAAGTTATCCGCCCAGCACTTGGTATTTCAATGGTAAACTTGAGCGACCTTTCAACAAATGCA
ATTGCTCAACTTAACATTCCAACAAGTGTAACAAGCGGTGTCGTTGTGGCGGCTGTTCAATCTGGTATGCCAGCTGAAGG
TAATCTCGAACAATATGATGTCATCACAGCTATTGACGACAAAGAAGTAACATCTACTTCAGATCTTCAAAGTATCCTTT
ATACTCATTCTGTTGGTGACTCTGTCAAAGTAACCTTCTACCGTGGAACTGATAAGAAAACAGCCACAATTAAATTAACT
AAGACAACACAAGATTTATCTTCCTCAAACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

64.691

98.78

0.639

  htrA Streptococcus gordonii str. Challis substr. CH1

60.049

99.512

0.598

  htrA Streptococcus pneumoniae D39

58.809

98.293

0.578

  htrA Streptococcus pneumoniae TIGR4

58.809

98.293

0.578

  htrA Streptococcus pneumoniae R6

58.809

98.293

0.578

  htrA Streptococcus pneumoniae Rx1

58.809

98.293

0.578

  htrA Streptococcus mitis NCTC 12261

58.561

98.293

0.576


Multiple sequence alignment