Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   AU077_RS09205 Genome accession   NZ_CP013688
Coordinates   1848510..1849466 (-) Length   318 a.a.
NCBI ID   WP_014293770.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1843510..1854466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS09175 (AU077_09175) comR 1844487..1845386 (-) 900 WP_058621959.1 helix-turn-helix domain-containing protein Regulator
  AU077_RS09180 (AU077_09180) - 1845565..1846200 (-) 636 WP_014293774.1 CPBP family intramembrane glutamic endopeptidase -
  AU077_RS09185 (AU077_09185) - 1846212..1846664 (-) 453 WP_058621960.1 hypothetical protein -
  AU077_RS09190 (AU077_09190) - 1846677..1846886 (-) 210 WP_014293772.1 hypothetical protein -
  AU077_RS09195 (AU077_09195) - 1846896..1847096 (-) 201 WP_012961332.1 helix-turn-helix transcriptional regulator -
  AU077_RS09200 (AU077_09200) - 1847258..1848457 (-) 1200 WP_014293771.1 acetate kinase -
  AU077_RS09205 (AU077_09205) comYH 1848510..1849466 (-) 957 WP_014293770.1 class I SAM-dependent methyltransferase Machinery gene
  AU077_RS09210 (AU077_09210) comYG 1849548..1849853 (-) 306 WP_058621961.1 competence type IV pilus minor pilin ComGG Machinery gene
  AU077_RS09215 (AU077_09215) comYF 1849825..1850292 (-) 468 WP_014293768.1 competence type IV pilus minor pilin ComGF Machinery gene
  AU077_RS09220 (AU077_09220) comGE 1850246..1850539 (-) 294 WP_044562943.1 competence type IV pilus minor pilin ComGE -
  AU077_RS09225 (AU077_09225) comYD 1850493..1850924 (-) 432 WP_014293766.1 competence type IV pilus minor pilin ComGD Machinery gene
  AU077_RS09230 (AU077_09230) comYC 1850908..1851201 (-) 294 WP_039670352.1 competence type IV pilus major pilin ComGC Machinery gene
  AU077_RS09235 (AU077_09235) comYB 1851201..1852286 (-) 1086 WP_014293764.1 competence type IV pilus assembly protein ComGB Machinery gene
  AU077_RS09240 (AU077_09240) comYA 1852168..1853109 (-) 942 WP_014293763.1 competence type IV pilus ATPase ComGA Machinery gene
  AU077_RS09245 (AU077_09245) - 1853219..1853548 (-) 330 WP_014293762.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 36058.98 Da        Isoelectric Point: 4.3705

>NTDB_id=164073 AU077_RS09205 WP_014293770.1 1848510..1849466(-) (comYH) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MNFEKIETAYELILENIQLIENELKTHIYDALIEQNSFYLGAEGASEEVAANNEKLRQLALTKEEWRRAFQFIFIKAGQT
EQLQANHQFTPDAIGFILLFLIENLTDSDKIDLLEIGSGTGNLAQTLLNNSSKELNYLGIEVDDLLIDLSASIAEVLDSD
AQFIQEDAVRPQILKESDVIISDLPVGFYPNDDIAKRYKVANSDEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKQWLKDYADIIAVITLPESIFGNAANAKSIFVLKKQAAYTPETFVYPLSDLQSREALTDFIRKFQKWKIDNINF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=164073 AU077_RS09205 WP_014293770.1 1848510..1849466(-) (comYH) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGAATTTTGAAAAAATTGAAACAGCCTATGAGCTGATTTTAGAAAATATCCAATTAATTGAAAATGAGTTAAAAACTCA
TATTTATGATGCGCTTATTGAACAGAATTCTTTTTACTTGGGGGCTGAAGGTGCCAGTGAAGAAGTTGCTGCCAACAATG
AAAAACTACGTCAGCTTGCATTGACCAAAGAAGAGTGGCGTCGAGCTTTCCAATTTATCTTTATTAAAGCTGGTCAAACA
GAGCAGCTGCAAGCCAATCATCAATTTACACCAGATGCTATTGGTTTTATTTTGCTGTTCTTGATTGAAAATCTGACAGA
TTCAGATAAAATTGATCTTTTAGAAATTGGTAGTGGGACAGGAAACCTTGCTCAAACATTGTTAAATAATTCGTCTAAAG
AATTAAATTATCTTGGTATTGAAGTTGACGATTTATTGATTGATTTATCAGCAAGTATTGCAGAAGTGTTGGATTCTGAT
GCTCAGTTTATTCAAGAAGATGCTGTGCGTCCACAAATTCTGAAAGAAAGTGATGTGATTATTAGTGATTTGCCAGTTGG
TTTTTATCCTAATGATGACATTGCCAAACGTTATAAAGTGGCAAATTCTGATGAGCATACTTATGCCCATCATTTATTGA
TGGAACAATCGTTAAAATATCTCAAAAAAGATGGTATTGCAGTCTTTTTGGCGCCCGTCAGTCTTTTGACAAGTAAGCAA
AGTGATTTATTGAAACAATGGTTGAAAGATTACGCGGATATTATCGCCGTGATTACCTTGCCAGAATCTATTTTTGGTAA
TGCAGCGAATGCAAAATCAATTTTTGTTTTGAAAAAACAGGCTGCGTATACGCCAGAAACCTTTGTTTATCCACTTTCTG
ACTTACAAAGTCGTGAAGCTCTGACTGATTTCATTAGAAAATTTCAAAAATGGAAAATTGATAATATTAATTTTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(71-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

69.304

99.371

0.689
  comYH Streptococcus mutans UA159

68.987

99.371

0.686

Multiple sequence alignment