Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   AU077_RS03940 Genome accession   NZ_CP013688
Coordinates   783431..784660 (+) Length   409 a.a.
NCBI ID   WP_012962047.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 778431..789660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS03920 (AU077_03920) - 779032..780315 (-) 1284 WP_014294688.1 hydroxymethylglutaryl-CoA reductase, degradative -
  AU077_RS03925 (AU077_03925) - 780290..781468 (-) 1179 WP_058621605.1 hydroxymethylglutaryl-CoA synthase -
  AU077_RS03930 (AU077_03930) - 781790..782629 (+) 840 WP_058621606.1 thymidylate synthase -
  AU077_RS03935 (AU077_03935) - 782717..783211 (+) 495 WP_014294685.1 dihydrofolate reductase -
  AU077_RS11035 - 783228..783398 (+) 171 WP_003065196.1 hypothetical protein -
  AU077_RS03940 (AU077_03940) clpX 783431..784660 (+) 1230 WP_012962047.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AU077_RS03945 (AU077_03945) yihA 784671..785264 (+) 594 WP_058621607.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  AU077_RS03950 (AU077_03950) - 785563..786939 (+) 1377 WP_058621608.1 amino acid permease -
  AU077_RS03955 (AU077_03955) mmuM 786952..787899 (+) 948 WP_014294682.1 homocysteine S-methyltransferase -
  AU077_RS03960 (AU077_03960) - 787943..788610 (-) 668 Protein_805 YoaK family protein -
  AU077_RS03965 (AU077_03965) - 788719..789366 (-) 648 Protein_806 endonuclease III domain-containing protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45154.77 Da        Isoelectric Point: 4.5644

>NTDB_id=164046 AU077_RS03940 WP_012962047.1 783431..784660(+) (clpX) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MVGNRTNDVKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLATLDEYVVGQDR
AKRALAVAVYNHYKRVSFAESRNEEDVDLQKSNILMIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIDENASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLTADDLVRI
LTEPRNALVKQYQTLLSYDGVELEFDKDALQAIANKAIERKTGARGLRSIIEETMMDIMFEIPSQEEVTKVRITKAAVEG
KDKPILEIA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=164046 AU077_RS03940 WP_012962047.1 783431..784660(+) (clpX) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGGTTGGAAATCGAACAAATGATGTAAAAGTTTATTGCTCATTCTGTGGAAAAAGCCAAGATGAAGTGAAAAAAATCAT
TGCAGGAAACAATGTTTTTATCTGTAATGAGTGCGTGGCTTTATCACAAGAAATTATCAAAGAAGAACTTGCTGAGGAAG
TTCTTGCAGATTTAGCGGAAGTTCCAAAACCTAAAGAGTTGTTAGCAACTCTTGACGAATATGTCGTTGGTCAAGACCGT
GCCAAACGCGCGCTTGCCGTAGCTGTTTATAACCATTACAAACGTGTTTCTTTTGCGGAAAGTCGCAATGAAGAAGATGT
TGATTTGCAAAAATCAAACATTTTGATGATTGGTCCTACAGGTTCAGGAAAAACATTCCTAGCTCAAACTTTGGCTAAAA
CATTGAATGTACCGTTTGCAATTGCTGATGCGACATCATTGACAGAAGCAGGATACGTTGGTGAAGATGTTGAAAATATC
CTCTTGAAATTAATTCAAGCAGCTGATTTTAATATCGAACGCGCCGAACGCGGTATCATTTACGTGGATGAAATTGATAA
AATCGCTAAAAAAGGTGAAAATGTCTCAATTACACGTGATGTTTCAGGTGAAGGTGTTCAACAAGCACTTCTTAAAATCA
TTGAAGGAACCGTTGCTAGCGTACCACCTCAAGGCGGACGTAAGCACCCTAACCAAGAAATGATTCAAATTGATACTAAA
AATATCTTATTCATTGTCGGCGGTGCTTTTGATGGTATCGAAGATATTGTCAAACAACGTTTAGGTGAAAAGGTTATCGG
TTTTGGTCAAAATAACCGTAAAATTGATGAAAATGCTTCTTATATGCAAGAAATCATTTCAGAAGACATTCAAAAATTTG
GCTTGATTCCAGAGTTTATCGGACGTTTGCCAGTTGTAGCGGCACTTGAACAGTTGACGGCTGATGATTTGGTTCGTATC
TTGACAGAACCACGTAATGCCTTGGTTAAACAATATCAAACGCTATTATCATACGACGGTGTTGAACTAGAATTTGATAA
AGATGCTTTGCAAGCTATTGCTAACAAAGCCATTGAACGTAAGACAGGAGCTCGTGGTTTACGCTCAATTATTGAAGAAA
CTATGATGGATATCATGTTTGAAATTCCTAGCCAAGAAGAAGTGACTAAGGTTCGTATCACTAAAGCGGCTGTTGAAGGC
AAAGACAAACCAATTTTGGAAATTGCGTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.976

100

0.9
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.603

98.044

0.575

Multiple sequence alignment