Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ATY45_RS15755 Genome accession   NZ_CP013675
Coordinates   3368319..3369770 (+) Length   483 a.a.
NCBI ID   WP_171970756.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain PXO236     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3363465..3387346 3368319..3369770 within 0


Gene organization within MGE regions


Location: 3363465..3387346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY45_RS15735 (ATY45_15275) - 3363465..3363959 (-) 495 WP_044756974.1 hypothetical protein -
  ATY45_RS15740 (ATY45_15280) sucD 3364132..3365007 (-) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  ATY45_RS15745 (ATY45_15285) sucC 3365032..3366201 (-) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  ATY45_RS15750 (ATY45_15290) - 3366435..3368048 (+) 1614 WP_011258366.1 HAMP domain-containing sensor histidine kinase -
  ATY45_RS15755 (ATY45_15295) pilR 3368319..3369770 (+) 1452 WP_171970756.1 sigma-54 dependent transcriptional regulator Regulator
  ATY45_RS24995 - 3369843..3370049 (+) 207 WP_027703281.1 YhfG family protein -
  ATY45_RS27580 - 3370111..3370272 (+) 162 WP_153296778.1 hypothetical protein -
  ATY45_RS27585 (ATY45_15300) - 3370396..3370620 (+) 225 WP_325167351.1 cell filamentation protein Fic -
  ATY45_RS15765 (ATY45_15305) pilB 3370629..3372362 (-) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ATY45_RS15770 (ATY45_15310) - 3372397..3373923 (-) 1527 WP_011258362.1 membrane protein -
  ATY45_RS15775 (ATY45_15315) - 3373893..3374522 (-) 630 WP_011408070.1 hypothetical protein -
  ATY45_RS15780 (ATY45_15320) - 3374533..3376122 (-) 1590 WP_011408069.1 phosphoethanolamine transferase -
  ATY45_RS15785 (ATY45_15325) pilA2 3376257..3376682 (-) 426 WP_011408068.1 pilin Machinery gene
  ATY45_RS15790 (ATY45_15330) pilC 3377037..3378296 (+) 1260 WP_011408067.1 type II secretion system F family protein Machinery gene
  ATY45_RS15795 (ATY45_15335) - 3378303..3379166 (+) 864 WP_011258358.1 A24 family peptidase -
  ATY45_RS15800 (ATY45_15340) coaE 3379180..3379788 (+) 609 WP_011258357.1 dephospho-CoA kinase -
  ATY45_RS15805 (ATY45_15345) - 3379859..3381178 (+) 1320 WP_115862282.1 IS701-like element ISXo15 family transposase -
  ATY45_RS15810 (ATY45_15350) - 3382056..3383024 (-) 969 WP_011258802.1 IS5-like element ISXo1 family transposase -
  ATY45_RS26425 - 3383076..3383564 (-) 489 WP_128415435.1 DUF6714 family protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52446.18 Da        Isoelectric Point: 6.8290

>NTDB_id=163851 ATY45_RS15755 WP_171970756.1 3368319..3369770(+) (pilR) [Xanthomonas oryzae pv. oryzae strain PXO236]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=163851 ATY45_RS15755 WP_171970756.1 3368319..3369770(+) (pilR) [Xanthomonas oryzae pv. oryzae strain PXO236]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462

Multiple sequence alignment