Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ATY42_RS07810 Genome accession   NZ_CP013670
Coordinates   1615123..1616574 (-) Length   483 a.a.
NCBI ID   WP_173340383.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain PXO71     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610123..1621574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY42_RS07790 (ATY42_07545) - 1611371..1611730 (+) 360 Protein_1478 type IV-A pilus assembly ATPase PilB -
  ATY42_RS07795 (ATY42_07550) - 1611857..1612825 (-) 969 WP_011257031.1 IS5-like element ISXo1 family transposase -
  ATY42_RS07800 (ATY42_07555) pilB 1612885..1614264 (+) 1380 Protein_1480 type IV-A pilus assembly ATPase PilB -
  ATY42_RS27265 (ATY42_07560) - 1614273..1614497 (-) 225 WP_325167351.1 cell filamentation protein Fic -
  ATY42_RS27270 - 1614621..1614782 (-) 162 WP_153296778.1 hypothetical protein -
  ATY42_RS24185 - 1614844..1615050 (-) 207 WP_027703281.1 YhfG family protein -
  ATY42_RS07810 (ATY42_07565) pilR 1615123..1616574 (-) 1452 WP_173340383.1 sigma-54 dependent transcriptional regulator Regulator
  ATY42_RS07815 (ATY42_07570) - 1616845..1618458 (-) 1614 WP_011258366.1 HAMP domain-containing sensor histidine kinase -
  ATY42_RS07820 (ATY42_07575) sucC 1618692..1619861 (+) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  ATY42_RS07825 (ATY42_07580) sucD 1619886..1620761 (+) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  ATY42_RS07830 (ATY42_07585) - 1621081..1621377 (+) 297 WP_011408075.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52431.16 Da        Isoelectric Point: 6.9755

>NTDB_id=163754 ATY42_RS07810 WP_173340383.1 1615123..1616574(-) (pilR) [Xanthomonas oryzae pv. oryzae strain PXO71]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKNLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=163754 ATY42_RS07810 WP_173340383.1 1615123..1616574(-) (pilR) [Xanthomonas oryzae pv. oryzae strain PXO71]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCGGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGGTCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTGC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462

Multiple sequence alignment