Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   A6L58_RS08140 Genome accession   NZ_CP016682
Coordinates   1582194..1582871 (-) Length   225 a.a.
NCBI ID   WP_002222553.1    Uniprot ID   Q9JU84
Organism   Neisseria meningitidis strain M24705     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1577194..1587871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L58_RS08125 (A6L58_08125) hflX 1578780..1579958 (-) 1179 WP_002234919.1 GTPase HflX -
  A6L58_RS08130 (A6L58_08130) - 1579963..1581243 (-) 1281 WP_002225276.1 CAP domain-containing protein -
  A6L58_RS14875 - 1581245..1581373 (+) 129 WP_009347251.1 hypothetical protein -
  A6L58_RS08135 (A6L58_08135) - 1581396..1582121 (-) 726 WP_002222552.1 epoxyqueuosine reductase QueH -
  A6L58_RS08140 (A6L58_08140) ysxA/radC 1582194..1582871 (-) 678 WP_002222553.1 RadC family protein Machinery gene
  A6L58_RS14880 - 1582898..1583020 (+) 123 WP_255294323.1 hypothetical protein -
  A6L58_RS08145 (A6L58_08145) gshA 1582994..1584343 (-) 1350 WP_002213445.1 glutamate--cysteine ligase -
  A6L58_RS08150 (A6L58_08150) leuC 1584603..1586012 (+) 1410 WP_002229418.1 3-isopropylmalate dehydratase large subunit -
  A6L58_RS08155 (A6L58_08155) - 1586109..1586363 (+) 255 WP_002213442.1 hypothetical protein -
  A6L58_RS08160 (A6L58_08160) leuD 1586425..1587066 (+) 642 WP_002234920.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24990.83 Da        Isoelectric Point: 5.7262

>NTDB_id=163672 A6L58_RS08140 WP_002222553.1 1582194..1582871(-) (ysxA/radC) [Neisseria meningitidis strain M24705]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=163672 A6L58_RS08140 WP_002222553.1 1582194..1582871(-) (ysxA/radC) [Neisseria meningitidis strain M24705]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGAAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JU84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378