Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AUC31_RS09700 Genome accession   NZ_CP013659
Coordinates   1937476..1939284 (-) Length   602 a.a.
NCBI ID   WP_058383400.1    Uniprot ID   -
Organism   Planococcus rifietoensis strain M8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1932476..1944284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC31_RS09670 (AUC31_16460) - 1932509..1933384 (-) 876 WP_058383406.1 RluA family pseudouridine synthase -
  AUC31_RS09675 (AUC31_16455) - 1933389..1934198 (-) 810 WP_058383405.1 NAD kinase -
  AUC31_RS09680 (AUC31_16450) - 1934195..1934872 (-) 678 WP_058383404.1 GTP pyrophosphokinase -
  AUC31_RS09685 (AUC31_16445) - 1935145..1935714 (+) 570 WP_058383403.1 CYTH domain-containing protein -
  AUC31_RS09690 (AUC31_16440) - 1935811..1936209 (+) 399 WP_058383402.1 globin -
  AUC31_RS09695 (AUC31_16435) - 1936206..1937003 (+) 798 WP_058383401.1 ClpXP adapter SpxH family protein -
  AUC31_RS09700 (AUC31_16430) pepF 1937476..1939284 (-) 1809 WP_058383400.1 oligoendopeptidase F Regulator
  AUC31_RS09705 (AUC31_16425) - 1939337..1940491 (-) 1155 WP_157073483.1 competence protein CoiA -
  AUC31_RS09710 (AUC31_16420) mecA 1940552..1941208 (-) 657 WP_058383398.1 adaptor protein MecA -
  AUC31_RS09715 (AUC31_16415) spxA 1941507..1941902 (-) 396 WP_008429739.1 transcriptional regulator SpxA -
  AUC31_RS09720 (AUC31_16410) - 1942307..1943512 (-) 1206 WP_058383397.1 putative glycoside hydrolase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69019.36 Da        Isoelectric Point: 4.6911

>NTDB_id=163609 AUC31_RS09700 WP_058383400.1 1937476..1939284(-) (pepF) [Planococcus rifietoensis strain M8]
MTEKLLTRDQVPAELTWRLEDIFATDSQWEEEFKAVSALAEKAGQYEGTLSGGADALYDALSYKDELSERLRKLYAYAHM
RYDQDTTNSIYQAMDSRIKSLFAKTAAGLSFMTPEILSLDEAELNRYVDEQERLKLYKHALEELNKMRPHVLKAEQEALL
AQLSEVVGASSETFGMLNNADLEFPEIENENGEKVQITHGNYIRFMESKDRRVREDAFKAVYATYGKFRNTFASTLSGNV
KRDNVHARIRNYSSAREAALSDDHIPEAVYDQLVETVNNNLHLLQRYVALRKEVLGLDQVHMYDMYTPLVKEVKMEIPYD
KATGMMLEGLHALGEEYVGIVKSGIDNRWVDVKENKGKRSGAYSSGAYGTNPYILMNWQDNVDNLFTLAHEFGHSVHSHY
TRESQPFVYGDYSIFVAEVASTTNEALLNEHLVNTTEDEQERIYLLNHWLDGFRGTVFRQTMFAEFEHTIHQMDQNGEAL
TADRLTEVYYELNKKYFGEEMAVDEEIGLEWARIPHFYYNYYVFQYATGFSAATALSKKILEEGQPAVDRYINEFLKAGS
SDYPIEVLKKAGVDMTSSEPVEEACKVFGQKLEELEALLLKK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=163609 AUC31_RS09700 WP_058383400.1 1937476..1939284(-) (pepF) [Planococcus rifietoensis strain M8]
ATGACGGAAAAATTATTGACCAGAGATCAAGTGCCTGCAGAACTAACGTGGCGCTTGGAAGATATTTTTGCTACAGATTC
ACAATGGGAAGAGGAATTCAAAGCCGTCTCAGCGCTGGCTGAGAAAGCTGGACAATATGAAGGTACTCTATCAGGAGGCG
CGGACGCTTTGTACGACGCGCTAAGCTATAAAGATGAATTGTCGGAGCGCCTGCGCAAGCTCTACGCATATGCCCATATG
CGCTATGACCAAGATACGACGAATTCAATATACCAGGCGATGGACAGCCGCATCAAATCGCTTTTCGCCAAAACAGCAGC
AGGATTGTCTTTCATGACACCTGAAATCCTGTCTTTGGATGAAGCAGAATTGAACCGCTATGTAGATGAACAAGAAAGAT
TGAAACTATACAAGCATGCTCTTGAAGAACTTAATAAGATGCGTCCGCACGTACTGAAAGCAGAGCAAGAAGCCCTTCTT
GCGCAATTATCGGAAGTGGTCGGGGCATCTTCTGAAACCTTTGGCATGCTTAATAATGCCGATTTGGAGTTTCCGGAAAT
CGAAAATGAAAACGGCGAAAAAGTGCAGATTACACATGGCAATTACATCCGTTTCATGGAAAGCAAAGACCGCCGCGTGC
GTGAAGACGCATTCAAGGCCGTTTATGCGACATATGGAAAATTCCGTAACACCTTTGCATCCACTTTGTCTGGAAATGTT
AAACGGGATAATGTCCACGCGAGAATCCGTAACTATTCATCGGCTCGCGAAGCAGCGCTGTCGGATGACCATATTCCGGA
AGCTGTCTACGATCAATTGGTCGAAACCGTCAACAACAATCTTCATCTTCTGCAGCGCTACGTAGCGCTTCGCAAGGAAG
TATTGGGCCTTGATCAGGTCCATATGTATGACATGTATACGCCGCTCGTAAAGGAAGTCAAAATGGAGATCCCTTACGAC
AAGGCGACAGGCATGATGCTCGAAGGCTTGCATGCGCTCGGTGAAGAATACGTTGGCATCGTCAAATCCGGGATCGATAA
CCGCTGGGTCGACGTAAAAGAGAACAAGGGCAAACGCAGCGGTGCCTATTCTTCCGGCGCTTATGGCACGAACCCTTACA
TCCTGATGAACTGGCAGGACAATGTAGACAACTTATTCACCTTGGCGCACGAATTCGGGCATAGTGTCCATAGCCATTAC
ACAAGAGAAAGCCAACCGTTCGTCTACGGCGATTATTCCATCTTCGTGGCGGAAGTTGCATCGACGACGAATGAAGCCTT
GTTGAACGAACATTTGGTCAATACGACAGAAGATGAGCAAGAACGCATTTACTTGCTTAACCACTGGCTGGATGGTTTCC
GCGGGACAGTTTTCCGCCAGACAATGTTTGCTGAATTCGAGCACACGATCCATCAGATGGACCAGAACGGTGAAGCATTG
ACGGCTGACCGTTTGACGGAAGTGTATTATGAATTGAACAAAAAATATTTCGGCGAAGAGATGGCGGTAGATGAGGAAAT
CGGCCTCGAATGGGCGCGCATCCCACATTTCTATTATAATTATTATGTATTCCAGTATGCGACAGGCTTCAGTGCCGCTA
CGGCATTGAGCAAAAAGATCCTTGAAGAAGGGCAGCCCGCTGTAGATCGTTATATTAACGAATTCCTGAAAGCGGGCAGC
TCCGATTACCCGATTGAAGTATTGAAAAAAGCCGGTGTGGACATGACCTCGTCCGAGCCGGTCGAAGAGGCGTGCAAAGT
CTTTGGGCAGAAGCTTGAAGAACTTGAAGCCTTGTTGTTGAAGAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-586)

Oligopeptidase F (Peptidase_M3_N)

(115-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.653

98.671

0.48

Multiple sequence alignment