Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   AT706_RS20475 Genome accession   NZ_CP013654
Coordinates   3989093..3990238 (-) Length   381 a.a.
NCBI ID   WP_015384935.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3984093..3995238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS20440 (AT706_20440) - 3984661..3985224 (-) 564 WP_015483840.1 hypothetical protein -
  AT706_RS20445 (AT706_20445) - 3985217..3985864 (-) 648 WP_015384940.1 ABC transporter ATP-binding protein -
  AT706_RS20460 (AT706_20460) - 3987340..3988026 (-) 687 WP_236822444.1 hypothetical protein -
  AT706_RS20465 (AT706_20465) - 3988286..3988762 (-) 477 WP_015384936.1 hypothetical protein -
  AT706_RS20470 (AT706_20470) phrF 3988990..3989109 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  AT706_RS20475 (AT706_20475) rapF 3989093..3990238 (-) 1146 WP_015384935.1 response regulator aspartate phosphatase RapF Regulator
  AT706_RS21825 (AT706_20480) - 3990241..3990471 (+) 231 WP_015483838.1 hypothetical protein -
  AT706_RS20485 (AT706_20485) ywhK 3990468..3991823 (+) 1356 WP_015384933.1 YncE family protein -
  AT706_RS20490 (AT706_20490) ywhL 3991863..3993236 (+) 1374 WP_015483837.1 YncE family protein -
  AT706_RS20495 (AT706_20495) albG 3993242..3993943 (-) 702 WP_015384931.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  AT706_RS20500 (AT706_20500) albF 3993940..3995220 (-) 1281 WP_015483836.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45617.08 Da        Isoelectric Point: 5.1503

>NTDB_id=163567 AT706_RS20475 WP_015384935.1 3989093..3990238(-) (rapF) [Bacillus subtilis subsp. subtilis strain BSD-2]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDHMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=163567 AT706_RS20475 WP_015384935.1 3989093..3990238(-) (rapF) [Bacillus subtilis subsp. subtilis strain BSD-2]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTTAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCACATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTAATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAGAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-290)

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-208)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.95

100

0.99
  rapC Bacillus subtilis subsp. subtilis str. 168

57.632

99.738

0.575

Multiple sequence alignment