Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   AT706_RS20470 Genome accession   NZ_CP013654
Coordinates   3988990..3989109 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3983990..3994109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS20440 (AT706_20440) - 3984661..3985224 (-) 564 WP_015483840.1 hypothetical protein -
  AT706_RS20445 (AT706_20445) - 3985217..3985864 (-) 648 WP_015384940.1 ABC transporter ATP-binding protein -
  AT706_RS20460 (AT706_20460) - 3987340..3988026 (-) 687 WP_236822444.1 hypothetical protein -
  AT706_RS20465 (AT706_20465) - 3988286..3988762 (-) 477 WP_015384936.1 hypothetical protein -
  AT706_RS20470 (AT706_20470) phrF 3988990..3989109 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  AT706_RS20475 (AT706_20475) rapF 3989093..3990238 (-) 1146 WP_015384935.1 response regulator aspartate phosphatase RapF Regulator
  AT706_RS21825 (AT706_20480) - 3990241..3990471 (+) 231 WP_015483838.1 hypothetical protein -
  AT706_RS20485 (AT706_20485) ywhK 3990468..3991823 (+) 1356 WP_015384933.1 YncE family protein -
  AT706_RS20490 (AT706_20490) ywhL 3991863..3993236 (+) 1374 WP_015483837.1 YncE family protein -
  AT706_RS20495 (AT706_20495) albG 3993242..3993943 (-) 702 WP_015384931.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=163566 AT706_RS20470 WP_009968329.1 3988990..3989109(-) (phrF) [Bacillus subtilis subsp. subtilis strain BSD-2]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=163566 AT706_RS20470 WP_009968329.1 3988990..3989109(-) (phrF) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment