Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AT706_RS16425 Genome accession   NZ_CP013654
Coordinates   3192276..3193424 (-) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3187276..3198424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS16400 (AT706_16405) yclO 3187994..3188941 (-) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -
  AT706_RS16405 (AT706_16410) ceuB 3188934..3189884 (-) 951 WP_015382768.1 petrobactin ABC transporter permease YclN Machinery gene
  AT706_RS16410 (AT706_16415) thrD 3190269..3191633 (+) 1365 WP_015382767.1 aspartate kinase -
  AT706_RS16415 (AT706_16420) yczN 3191786..3191899 (+) 114 WP_014478831.1 YjcZ family sporulation protein -
  AT706_RS21070 yczM 3191981..3192070 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  AT706_RS16420 (AT706_16425) phrC 3192170..3192292 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  AT706_RS16425 (AT706_16430) rapC 3192276..3193424 (-) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  AT706_RS16430 (AT706_16435) yclK 3193588..3195009 (-) 1422 WP_080030630.1 two-component system sensor histidine kinase YclK -
  AT706_RS16435 (AT706_16440) yclJ 3194996..3195679 (-) 684 WP_015482792.1 two-component system response regulator YclJ -
  AT706_RS16440 (AT706_16445) yclI 3195892..3197352 (+) 1461 WP_015382763.1 ABC transporter permease -
  AT706_RS16445 (AT706_16450) yclH 3197368..3198048 (+) 681 WP_015382762.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=163554 AT706_RS16425 WP_014475800.1 3192276..3193424(-) (rapC) [Bacillus subtilis subsp. subtilis strain BSD-2]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=163554 AT706_RS16425 WP_014475800.1 3192276..3193424(-) (rapC) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTGTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACGTTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAATACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
CTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTATTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568

Multiple sequence alignment