Detailed information NTG0163542

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: AT706_RS12490
• Genome accession: NZ_CP013654
• Coordinates: 2437096..2438049 (-)
• Length: 317 a.a.
• NCBI ID: WP_014476425.1
• Uniprot ID: A0A0K6M9I2
• Organism: Bacillus subtilis subsp. subtilis strain BSD-2
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 2432096..2443049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AT706_RS12460 (AT706_12465)	appD	2432217..2433203 (-)	987	WP_015383344.1	oligopeptide ABC transporter ATP-binding protein AppD	-
AT706_RS12465 (AT706_12470)	yjaZ	2433396..2434181 (-)	786	WP_015383343.1	DUF2268 domain-containing protein	-
AT706_RS12470 (AT706_12475)	fabF	2434257..2435498 (-)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
AT706_RS12475 (AT706_12480)	fabH	2435521..2436459 (-)	939	WP_015483083.1	beta-ketoacyl-ACP synthase III	-
AT706_RS12480 (AT706_12485)	yjzB	2436624..2436860 (+)	237	WP_015383342.1	spore coat protein YjzB	-
AT706_RS12485 (AT706_12490)	comZ	2436890..2437081 (-)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
AT706_RS12490 (AT706_12495)	med	2437096..2438049 (-)	954	WP_014476425.1	transcriptional regulator Med	Regulator
AT706_RS12495 (AT706_12500)	-	2438139..2438696 (-)	558	WP_015383340.1	hypothetical protein	-
AT706_RS12500 (AT706_12505)	-	2438778..2439512 (-)	735	WP_015483082.1	hypothetical protein	-
AT706_RS12505 (AT706_12510)	yjzD	2439763..2439948 (+)	186	WP_003245236.1	YjzD family protein	-
AT706_RS12510 (AT706_12515)	yjzC	2439994..2440173 (-)	180	WP_003245356.1	YjzC family protein	-
AT706_RS12515 (AT706_12520)	argF	2440259..2441218 (-)	960	WP_015383338.1	ornithine carbamoyltransferase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35310.84 Da
• Isoelectric Point: 4.6031

>NTDB_id=163542 AT706_RS12490 WP_014476425.1 2437096..2438049(-) (med) [Bacillus subtilis subsp. subtilis strain BSD-2]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

• Length: 954 bp

>NTDB_id=163542 AT706_RS12490 WP_014476425.1 2437096..2438049(-) (med) [Bacillus subtilis subsp. subtilis strain BSD-2]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACCTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCCTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

3D structure

• AlphaFold DB: A0A0K6M9I2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	99.685	100	0.997