Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   AT706_RS12375 Genome accession   NZ_CP013654
Coordinates   2413644..2414765 (-) Length   373 a.a.
NCBI ID   WP_236822450.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 2408644..2419765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS12345 (AT706_12350) cwlQ 2408791..2409516 (+) 726 WP_015383358.1 bifunctional muramidase/murein lytic transglycosylase -
  AT706_RS12350 (AT706_12355) bhbI 2409771..2410169 (+) 399 WP_015383357.1 thiol management oxidoreductase component -
  AT706_RS12355 (AT706_12360) spxH 2410166..2411065 (+) 900 WP_003245184.1 protease adaptor protein SpxH -
  AT706_RS12365 (AT706_12370) - 2411380..2411547 (+) 168 WP_003244944.1 hypothetical protein -
  AT706_RS12370 (AT706_12375) pepF 2411585..2413414 (-) 1830 WP_003245178.1 oligoendopeptidase F -
  AT706_RS12375 (AT706_12380) coiA 2413644..2414765 (-) 1122 WP_236822450.1 competence protein CoiA Machinery gene
  AT706_RS21330 - 2414839..2414953 (+) 115 Protein_2451 hypothetical protein -
  AT706_RS12380 (AT706_12385) mecA 2414956..2415612 (-) 657 WP_015383354.1 adaptor protein MecA Regulator
  AT706_RS21335 - 2415579..2415719 (-) 141 WP_119122854.1 hypothetical protein -
  AT706_RS12385 (AT706_12390) yjbE 2415889..2416545 (+) 657 WP_015483086.1 TerC family protein -
  AT706_RS12390 (AT706_12395) spx 2416588..2416983 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  AT706_RS12395 (AT706_12400) yjbC 2417164..2417739 (-) 576 WP_015383352.1 GNAT family N-acetyltransferase -
  AT706_RS12400 (AT706_12405) yjbB 2417903..2419120 (-) 1218 WP_080030656.1 MFS transporter -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 43750.82 Da        Isoelectric Point: 10.0038

>NTDB_id=163537 AT706_RS12375 WP_236822450.1 2413644..2414765(-) (coiA) [Bacillus subtilis subsp. subtilis strain BSD-2]
MFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLKTQRASPILEP
YIRTINQRPDVMARIKEHMLAVEYQCATIAPNVFQKLTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAFHWQFINASPY
RELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGVDDLFFTEPKPSIQYSGWTKAIHRFRHKPHRFNSKEINRL
RLLFYEKRQTPFSFLPTEVFVPVSKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNKNIALRFECSE
ECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPASGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=163537 AT706_RS12375 WP_236822450.1 2413644..2414765(-) (coiA) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACGGTTCTTCTGTCCGGTATGCGGGGGAGAGCT
AGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGAACAAGTCCTGCTCCATAGATATCGAACCGG
AAAGCGCCTACCACTTAGAAGGAAAAAGACAGTTGTATGTATGGCTGAAAACGCAACGGGCTTCACCAATATTGGAGCCG
TATATAAGGACCATCAACCAAAGACCGGACGTCATGGCAAGGATCAAGGAGCATATGCTTGCTGTTGAATATCAATGCGC
CACTATCGCACCAAATGTCTTTCAGAAGCTGACAGAGGGCTTCAAACAAGAAGGAATCATCCCGCAGTGGATTATGGGAT
ACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTTCATTGGCAGTTTATCAATGCAAGTCCATAC
AGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTTAGCCACATCATACCATTCTACACAAACCATTC
TTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGTAGACGATCTTTTTTTCACTGAACCGAAACCCTCAATTC
AATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCACATCGGTTTAACTCAAAGGAAATAAATCGCCTT
AGGCTGCTGTTTTATGAGAAACGGCAGACGCCTTTTTCTTTTCTGCCGACTGAAGTGTTTGTTCCTGTTAGTAAAGGGGC
AGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTATGACGGATCTTGGAGGTAAACGTGCGCCAA
TTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAGAACATTGCACTCAGGTTTGAATGCAGCGAA
GAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAGACTCAGAAAGAAGT
ATATGTGCTGAATCAGCCTGCAAGTGGCATACACTCAATGCAGGATCTCATAGAAAGAGACCGCAGCTGTTTTATAGAAT
GA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

97.319

100

0.973


Multiple sequence alignment