Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AT706_RS00910 Genome accession   NZ_CP013654
Coordinates   183047..183769 (+) Length   240 a.a.
NCBI ID   WP_015384784.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 178047..188769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS00885 (AT706_00885) degS 178358..179515 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AT706_RS00890 (AT706_00890) degU 179598..180287 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AT706_RS00895 (AT706_00895) fakBA 180385..181230 (+) 846 WP_003227986.1 DegV family protein -
  AT706_RS00900 (AT706_00900) comFA 181336..182727 (+) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  AT706_RS00905 (AT706_00905) comFB 182787..183083 (+) 297 WP_015483764.1 late competence protein ComFB -
  AT706_RS00910 (AT706_00910) comFC 183047..183769 (+) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  AT706_RS00915 (AT706_00915) yvyF 183843..184262 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AT706_RS00920 (AT706_00920) flgM 184343..184609 (+) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  AT706_RS00925 (AT706_00925) flgN 184625..185107 (+) 483 WP_014481048.1 flagellar protein FlgN -
  AT706_RS00930 (AT706_00930) flgK 185126..186649 (+) 1524 WP_015384782.1 flagellar hook-associated protein FlgK -
  AT706_RS00935 (AT706_00935) flgL 186660..187556 (+) 897 WP_014478126.1 flagellar hook-associated protein FlgL -
  AT706_RS00940 (AT706_00940) yviE 187603..188178 (+) 576 WP_015384781.1 DUF6470 family protein -
  AT706_RS00945 (AT706_00945) fliW 188199..188630 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27495.71 Da        Isoelectric Point: 9.1388

>NTDB_id=163497 AT706_RS00910 WP_015384784.1 183047..183769(+) (comFC) [Bacillus subtilis subsp. subtilis strain BSD-2]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLNKITGHICTLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=163497 AT706_RS00910 WP_015384784.1 183047..183769(+) (comFC) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAATAAAATCACAGGACATA
TTTGCACTCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment