Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AT706_RS00900 Genome accession   NZ_CP013654
Coordinates   181336..182727 (+) Length   463 a.a.
NCBI ID   WP_015384785.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 176336..187727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS00880 (AT706_00880) yvyE 177488..178141 (-) 654 WP_003227979.1 YigZ family protein -
  AT706_RS00885 (AT706_00885) degS 178358..179515 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AT706_RS00890 (AT706_00890) degU 179598..180287 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AT706_RS00895 (AT706_00895) fakBA 180385..181230 (+) 846 WP_003227986.1 DegV family protein -
  AT706_RS00900 (AT706_00900) comFA 181336..182727 (+) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  AT706_RS00905 (AT706_00905) comFB 182787..183083 (+) 297 WP_015483764.1 late competence protein ComFB -
  AT706_RS00910 (AT706_00910) comFC 183047..183769 (+) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  AT706_RS00915 (AT706_00915) yvyF 183843..184262 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AT706_RS00920 (AT706_00920) flgM 184343..184609 (+) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  AT706_RS00925 (AT706_00925) flgN 184625..185107 (+) 483 WP_014481048.1 flagellar protein FlgN -
  AT706_RS00930 (AT706_00930) flgK 185126..186649 (+) 1524 WP_015384782.1 flagellar hook-associated protein FlgK -
  AT706_RS00935 (AT706_00935) flgL 186660..187556 (+) 897 WP_014478126.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52498.54 Da        Isoelectric Point: 9.9354

>NTDB_id=163496 AT706_RS00900 WP_015384785.1 181336..182727(+) (comFA) [Bacillus subtilis subsp. subtilis strain BSD-2]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLNLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=163496 AT706_RS00900 WP_015384785.1 181336..182727(+) (comFA) [Bacillus subtilis subsp. subtilis strain BSD-2]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGGAGCCGTCATTTGCTCAGGAC
TGAACTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTATTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATT
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGTTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCAATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.488

100

0.985

Multiple sequence alignment