Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IJ21_RS01945 | Genome accession | NZ_CP013653 |
| Coordinates | 390348..390872 (+) | Length | 174 a.a. |
| NCBI ID | WP_062489791.1 | Uniprot ID | A0A0U2WHC4 |
| Organism | Paenibacillus sp. 32O-W | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 385348..395872
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IJ21_RS01920 (IJ21_03850) | - | 386000..386800 (-) | 801 | WP_062489782.1 | ABC transporter permease subunit | - |
| IJ21_RS01925 (IJ21_03860) | - | 386906..387991 (-) | 1086 | WP_235593320.1 | sulfonate ABC transporter substrate-binding protein | - |
| IJ21_RS01930 (IJ21_03870) | solA | 388043..389200 (-) | 1158 | WP_062489784.1 | N-methyl-L-tryptophan oxidase | - |
| IJ21_RS01935 (IJ21_03880) | - | 389336..389707 (+) | 372 | WP_062489786.1 | helix-turn-helix domain-containing protein | - |
| IJ21_RS01940 (IJ21_03890) | rpsF | 390028..390312 (+) | 285 | WP_062489789.1 | 30S ribosomal protein S6 | - |
| IJ21_RS01945 (IJ21_03900) | ssbA | 390348..390872 (+) | 525 | WP_062489791.1 | single-stranded DNA-binding protein | Machinery gene |
| IJ21_RS01950 (IJ21_03910) | rpsR | 390891..391163 (+) | 273 | WP_062489793.1 | 30S ribosomal protein S18 | - |
| IJ21_RS01955 (IJ21_03920) | - | 391244..391594 (-) | 351 | WP_062489795.1 | DUF4870 domain-containing protein | - |
| IJ21_RS01960 (IJ21_03930) | - | 391808..392863 (+) | 1056 | WP_062489797.1 | LCP family protein | - |
| IJ21_RS01965 (IJ21_03940) | - | 392914..393381 (+) | 468 | WP_062489799.1 | CBS domain-containing protein | - |
| IJ21_RS01970 (IJ21_03950) | - | 393536..394450 (+) | 915 | WP_062489801.1 | DUF2232 domain-containing protein | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18757.46 Da Isoelectric Point: 4.7158
>NTDB_id=163472 IJ21_RS01945 WP_062489791.1 390348..390872(+) (ssbA) [Paenibacillus sp. 32O-W]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPFTSSQGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRMQVR
NYENNEGKRVYVTEVVADNVRFLESPNRDGGGAREEGYGGGYGSTGGSAGGFGGSGGYGGNYSGNRSGGGSSRNDDPFSD
DGRPIDISEDDLPF
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPFTSSQGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRMQVR
NYENNEGKRVYVTEVVADNVRFLESPNRDGGGAREEGYGGGYGSTGGSAGGFGGSGGYGGNYSGNRSGGGSSRNDDPFSD
DGRPIDISEDDLPF
Nucleotide
Download Length: 525 bp
>NTDB_id=163472 IJ21_RS01945 WP_062489791.1 390348..390872(+) (ssbA) [Paenibacillus sp. 32O-W]
ATGTTGAACCGCGTCATTCTCATCGGCAGATTAACGAGAGACCCTGAACTTCGATATACGCCGTCCGGCGTAGCGGTTAC
CCAGTTTACGCTGGCTGTGGACAGACCGTTCACCAGCAGTCAGGGCGAGCGCGAAGCCGACTTTATTCCGGTCGTCACAT
GGCGCCAGCTTGCCGAGACGTGCGCCAACTATTTGCGCAAAGGCCGTTTGACAGCCGTCGAGGGCCGCATGCAAGTGCGG
AACTACGAGAACAACGAGGGGAAGCGCGTTTATGTGACGGAGGTCGTGGCCGATAATGTCCGGTTCCTCGAATCGCCGAA
CCGCGATGGCGGGGGCGCGCGCGAGGAAGGATACGGCGGCGGCTACGGAAGCACTGGAGGAAGCGCTGGCGGCTTCGGGG
GAAGCGGCGGTTACGGCGGGAATTACTCCGGCAACCGTTCCGGCGGCGGTTCTTCGCGGAACGACGACCCGTTCTCGGAT
GACGGACGACCGATCGACATTTCGGAAGATGATTTGCCATTTTAA
ATGTTGAACCGCGTCATTCTCATCGGCAGATTAACGAGAGACCCTGAACTTCGATATACGCCGTCCGGCGTAGCGGTTAC
CCAGTTTACGCTGGCTGTGGACAGACCGTTCACCAGCAGTCAGGGCGAGCGCGAAGCCGACTTTATTCCGGTCGTCACAT
GGCGCCAGCTTGCCGAGACGTGCGCCAACTATTTGCGCAAAGGCCGTTTGACAGCCGTCGAGGGCCGCATGCAAGTGCGG
AACTACGAGAACAACGAGGGGAAGCGCGTTTATGTGACGGAGGTCGTGGCCGATAATGTCCGGTTCCTCGAATCGCCGAA
CCGCGATGGCGGGGGCGCGCGCGAGGAAGGATACGGCGGCGGCTACGGAAGCACTGGAGGAAGCGCTGGCGGCTTCGGGG
GAAGCGGCGGTTACGGCGGGAATTACTCCGGCAACCGTTCCGGCGGCGGTTCTTCGCGGAACGACGACCCGTTCTCGGAT
GACGGACGACCGATCGACATTTCGGAAGATGATTTGCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.592 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
49.438 |
100 |
0.506 |