Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ATM98_RS04115 Genome accession   NZ_CP013651
Coordinates   839789..840598 (-) Length   269 a.a.
NCBI ID   WP_061564206.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 834789..845598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS04100 (ATM98_04100) rnc 837608..838309 (-) 702 WP_061564204.1 ribonuclease III -
  ATM98_RS04105 (ATM98_04105) - 838723..838905 (-) 183 WP_061564205.1 hypothetical protein -
  ATM98_RS09795 - 839056..839187 (-) 132 WP_257721763.1 hypothetical protein -
  ATM98_RS04110 (ATM98_04110) - 839342..839704 (-) 363 WP_006596984.1 YbaN family protein -
  ATM98_RS04115 (ATM98_04115) vicX 839789..840598 (-) 810 WP_061564206.1 MBL fold metallo-hydrolase Regulator
  ATM98_RS04120 (ATM98_04120) micB 840607..841953 (-) 1347 WP_061564207.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ATM98_RS04125 (ATM98_04125) micA 841946..842647 (-) 702 WP_048789362.1 response regulator YycF Regulator
  ATM98_RS04130 (ATM98_04130) thrS 843030..844973 (-) 1944 WP_061564208.1 threonine--tRNA ligase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29744.72 Da        Isoelectric Point: 5.7538

>NTDB_id=163401 ATM98_RS04115 WP_061564206.1 839789..840598(-) (vicX) [Streptococcus sp. A12]
MDEKGFKYSILASGSSGNSFYLETPKKKILVDAGLSGKKITGLLAEIDRKPEDIDAILITHEHSDHIHGVGVLARKYGMD
LYANEATWKAMEGSKYLGKVDDSQKHLFEMGKTLTFGDLDVESFGVSHDAAAPQFYRFMKDGKSFVMLTDTGYVSDRMVG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNKTKKIYLGHLSKENNIKELAHMTMVN
QLARADLAVGHDFDVLDTSPDTATPLVDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=163401 ATM98_RS04115 WP_061564206.1 839789..840598(-) (vicX) [Streptococcus sp. A12]
ATGGATGAAAAAGGGTTTAAGTATAGTATTTTAGCTTCAGGATCGAGTGGTAATTCTTTTTACTTAGAGACTCCTAAGAA
GAAAATTCTAGTAGATGCAGGCTTGTCCGGAAAGAAAATTACAGGTTTGCTTGCAGAGATTGACCGCAAACCCGAAGATA
TTGATGCTATTTTAATCACACATGAACATTCGGATCACATTCATGGCGTTGGTGTGTTAGCTCGTAAATACGGGATGGAC
CTATACGCCAACGAAGCTACCTGGAAGGCCATGGAGGGAAGCAAATACCTTGGGAAGGTCGATGACTCCCAGAAACATTT
ATTTGAAATGGGCAAGACCTTAACCTTCGGGGATTTGGATGTGGAAAGTTTTGGTGTCAGCCATGATGCTGCGGCTCCCC
AGTTCTACCGGTTCATGAAGGATGGGAAGAGCTTTGTCATGCTGACGGATACAGGTTATGTCAGTGATCGAATGGTAGGG
ATTGTTGAAAATGCAGATGGCTATTTGATTGAGTCCAACCACGATGTAGAAATCCTACGGGCAGGCTCTTATGCTTGGCG
ATTAAAGCAACGGATCTTATCCGATTTGGGCCACCTCTCTAATGAAGATGGCGCAGATGCTATGATTCGGACCCTAGGCA
ATAAGACCAAAAAGATTTATCTGGGCCACTTATCGAAGGAAAACAATATCAAGGAATTGGCCCATATGACCATGGTTAAT
CAACTGGCTCGAGCAGATCTAGCAGTGGGGCATGATTTTGATGTCTTGGATACATCTCCAGATACAGCGACTCCATTAGT
AGATATCTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.695

100

0.777

Multiple sequence alignment