Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AUC50_RS11195 Genome accession   NZ_CP013621
Coordinates   2228852..2229247 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RIVM3897     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2223852..2234247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC50_RS11170 (AUC50_11150) thiE 2224451..2225092 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  AUC50_RS11175 (AUC50_11155) thiM 2225094..2225885 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  AUC50_RS11180 (AUC50_11160) thiD 2225869..2226699 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AUC50_RS11185 (AUC50_11165) tenA 2226692..2227381 (-) 690 WP_000396068.1 thiaminase II -
  AUC50_RS11190 (AUC50_11175) sceD 2227768..2228463 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  AUC50_RS11195 (AUC50_11180) ssb 2228852..2229247 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  AUC50_RS11200 (AUC50_11185) - 2229441..2229881 (+) 441 WP_060585343.1 YwpF-like family protein -
  AUC50_RS11205 (AUC50_11190) fabZ 2229938..2230378 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AUC50_RS11210 (AUC50_11195) murA 2230412..2231677 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AUC50_RS11215 (AUC50_11200) - 2231788..2232021 (-) 234 WP_000384523.1 DUF1146 family protein -
  AUC50_RS11220 (AUC50_11205) - 2232674..2233078 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=163351 AUC50_RS11195 WP_000932694.1 2228852..2229247(-) (ssb) [Staphylococcus aureus strain RIVM3897]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=163351 AUC50_RS11195 WP_000932694.1 2228852..2229247(-) (ssb) [Staphylococcus aureus strain RIVM3897]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment