Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   AUC48_RS02680 Genome accession   NZ_CP013616
Coordinates   570261..570830 (+) Length   189 a.a.
NCBI ID   WP_000872879.1    Uniprot ID   A0A2S6DF07
Organism   Staphylococcus aureus strain RIVM1295     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 565261..575830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC48_RS02655 (AUC48_02650) cysE 566473..567120 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  AUC48_RS02660 (AUC48_02655) cysS 567104..568504 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  AUC48_RS02665 (AUC48_02660) - 568497..568901 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  AUC48_RS02670 (AUC48_02665) rlmB 568909..569655 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AUC48_RS02675 (AUC48_02670) - 569655..570179 (+) 525 WP_000664738.1 NYN domain-containing protein -
  AUC48_RS02680 (AUC48_02675) sigH 570261..570830 (+) 570 WP_000872879.1 sigma-70 family RNA polymerase sigma factor Regulator
  AUC48_RS14080 rpmG 570945..571088 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  AUC48_RS02685 (AUC48_02680) secE 571144..571326 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  AUC48_RS02690 (AUC48_02685) nusG 571339..571887 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  AUC48_RS02695 (AUC48_02690) rplK 572068..572490 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  AUC48_RS02700 (AUC48_02695) rplA 572698..573390 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  AUC48_RS02705 (AUC48_02700) rplJ 573662..574162 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  AUC48_RS02710 (AUC48_02705) rplL 574205..574573 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  AUC48_RS02715 (AUC48_02710) - 574748..575356 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.02 Da        Isoelectric Point: 9.7681

>NTDB_id=163233 AUC48_RS02680 WP_000872879.1 570261..570830(+) (sigH) [Staphylococcus aureus strain RIVM1295]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=163233 AUC48_RS02680 WP_000872879.1 570261..570830(+) (sigH) [Staphylococcus aureus strain RIVM1295]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6DF07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment