Detailed information NTG0163230

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: AUC48_RS01840
• Genome accession: NZ_CP013616
• Coordinates: 407157..407660 (+)
• Length: 167 a.a.
• NCBI ID: WP_000934799.1
• Uniprot ID: A0A7U7IE99
• Organism: Staphylococcus aureus strain RIVM1295
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 402157..412660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AUC48_RS01810 (AUC48_01810)	-	403097..403942 (+)	846	WP_001825659.1	ParB/RepB/Spo0J family partition protein	-
AUC48_RS01815 (AUC48_01815)	-	404096..404977 (+)	882	WP_000373073.1	mechanosensitive ion channel family protein	-
AUC48_RS01820 (AUC48_01820)	-	405007..405210 (+)	204	WP_000157348.1	DUF951 domain-containing protein	-
AUC48_RS01825 (AUC48_01825)	ychF	405222..406319 (+)	1098	WP_001218732.1	redox-regulated ATPase YchF	-
AUC48_RS01830 (AUC48_01830)	-	406405..406596 (-)	192	WP_001052481.1	hypothetical protein	-
AUC48_RS01835 (AUC48_01835)	rpsF	406840..407136 (+)	297	WP_001261460.1	30S ribosomal protein S6	-
AUC48_RS01840 (AUC48_01840)	ssbA	407157..407660 (+)	504	WP_000934799.1	single-stranded DNA-binding protein	Machinery gene
AUC48_RS01845 (AUC48_01845)	rpsR	407712..407954 (+)	243	WP_000897044.1	30S ribosomal protein S18	-
AUC48_RS15060	-	408191..408418 (-)	228	Protein_367	Abi family protein	-
AUC48_RS14870	-	408411..408687 (-)	277	Protein_368	site-specific integrase	-
AUC48_RS01855 (AUC48_01855)	-	408766..409080 (+)	315	Protein_369	exotoxin beta-grasp domain-containing protein	-
AUC48_RS01860 (AUC48_01860)	-	409446..409814 (+)	369	WP_000849160.1	YxeA family protein	-
AUC48_RS01865 (AUC48_01865)	-	409994..410566 (+)	573	WP_000769718.1	PepSY domain-containing protein	-
AUC48_RS01870 (AUC48_01870)	-	410704..410967 (-)	264	WP_001055897.1	helix-turn-helix domain-containing protein	-
AUC48_RS01875 (AUC48_01875)	-	411261..411512 (+)	252	WP_000466741.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
AUC48_RS01880 (AUC48_01880)	-	411554..411762 (-)	209	Protein_374	hypothetical protein	-
AUC48_RS01885 (AUC48_01885)	-	411940..412521 (+)	582	WP_000158385.1	histidine phosphatase family protein	-

Sequence

Protein

• Length: 167 a.a.
• Molecular weight: 18539.12 Da
• Isoelectric Point: 4.7305

>NTDB_id=163230 AUC48_RS01840 WP_000934799.1 407157..407660(+) (ssbA) [Staphylococcus aureus strain RIVM1295]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide

• Length: 504 bp

>NTDB_id=163230 AUC48_RS01840 WP_000934799.1 407157..407660(+) (ssbA) [Staphylococcus aureus strain RIVM1295]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A7U7IE99

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	65.341	100	0.689
ssb	Latilactobacillus sakei subsp. sakei 23K	54.971	100	0.563
ssbB	Bacillus subtilis subsp. subtilis str. 168	58.491	63.473	0.371
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.365