Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AT236_RS00045 Genome accession   NZ_CP013610
Coordinates   9574..10149 (+) Length   191 a.a.
NCBI ID   WP_060597771.1    Uniprot ID   -
Organism   Lactobacillus delbrueckii subsp. bulgaricus strain MN-BM-F01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4574..15149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT236_RS00030 (AT236_00005) gyrB 4579..6540 (+) 1962 WP_003623650.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AT236_RS00035 (AT236_00006) gyrA 6553..9024 (+) 2472 WP_003623653.1 DNA gyrase subunit A -
  AT236_RS00040 (AT236_00007) rpsF 9240..9533 (+) 294 WP_003612647.1 30S ribosomal protein S6 -
  AT236_RS00045 (AT236_00008) ssb 9574..10149 (+) 576 WP_060597771.1 single-stranded DNA-binding protein Machinery gene
  AT236_RS00050 (AT236_00009) rpsR 10176..10412 (+) 237 WP_003622127.1 30S ribosomal protein S18 -
  AT236_RS00055 (AT236_00010) - 10553..12574 (+) 2022 WP_060597772.1 DHH family phosphoesterase -
  AT236_RS00060 (AT236_00011) rplI 12597..13052 (+) 456 WP_014564436.1 50S ribosomal protein L9 -
  AT236_RS00065 (AT236_00012) dnaB 13076..14446 (+) 1371 WP_060597773.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20654.31 Da        Isoelectric Point: 4.5519

>NTDB_id=163187 AT236_RS00045 WP_060597771.1 9574..10149(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain MN-BM-F01]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNSGFGGQGQSQNTGFNTEFGGGSGYANNAFGSPAQSNGPANAGFNE
DNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=163187 AT236_RS00045 WP_060597771.1 9574..10149(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain MN-BM-F01]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGGATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACAGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGAATTTG
GCGGCGGCAGCGGTTACGCCAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAA
GATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGA
CGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.333

100

0.586
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.12

100

0.471

Multiple sequence alignment