Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   A6L96_RS07920 Genome accession   NZ_CP016673
Coordinates   1530303..1530914 (+) Length   203 a.a.
NCBI ID   WP_002248273.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25459     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1525303..1535914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L96_RS14680 - 1525394..1525501 (+) 108 Protein_1476 IS5/IS1182 family transposase -
  A6L96_RS07895 (A6L96_07895) - 1525546..1525878 (+) 333 WP_002226445.1 hypothetical protein -
  A6L96_RS07900 (A6L96_07900) - 1526210..1526719 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L96_RS07905 (A6L96_07905) - 1527291..1527878 (-) 588 WP_002220670.1 superoxide dismutase -
  A6L96_RS07910 (A6L96_07910) dnaB 1528041..1529447 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6L96_RS07915 (A6L96_07915) pilH 1529602..1530279 (+) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6L96_RS07920 (A6L96_07920) pilV 1530303..1530914 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Regulator
  A6L96_RS07925 (A6L96_07925) pilJ 1530911..1531849 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  A6L96_RS07930 (A6L96_07930) pilK 1531828..1532421 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L96_RS07935 (A6L96_07935) pilX 1532426..1532899 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L96_RS07940 (A6L96_07940) - 1534803..1535231 (-) 429 Protein_1486 AzlC family ABC transporter permease -
  A6L96_RS07945 (A6L96_07945) dut 1535374..1535826 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22100.14 Da        Isoelectric Point: 4.8335

>NTDB_id=163047 A6L96_RS07920 WP_002248273.1 1530303..1530914(+) (pilV) [Neisseria meningitidis strain M25459]
MKNNDCFRLKDSQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMRNHTLSAVDGDFAIDAIKTKAQLAEEQLKRFSYELKNALPDAAAIRYAVCKDSLGAAPTLSAGSTFSPNCDNKAN
GDTLIKVLWVNDSAGDSDIARTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=163047 A6L96_RS07920 WP_002248273.1 1530303..1530914(+) (pilV) [Neisseria meningitidis strain M25459]
ATGAAGAATAATGATTGCTTCCGCCTGAAAGATTCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCGTTACTGTCTGTGCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGAGAAACCATACACTATCAGCTGTGGATGGCGATTTTGCGATTGATGCCATAAAAACTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCATCCGTTACGCCG
TCTGCAAGGATTCGTTGGGTGCTGCGCCGACATTGTCCGCCGGCAGTACTTTTTCTCCAAATTGCGATAATAAGGCAAAC
GGAGATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATCTTGAGGTGAG
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

91.304

100

0.931
  pilV/pilI Neisseria gonorrhoeae MS11

82.266

100

0.823