Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AT730_RS11870 Genome accession   NZ_CP013484
Coordinates   2547560..2548285 (-) Length   241 a.a.
NCBI ID   WP_064368901.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ATCC 33787     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2542560..2553285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT730_RS11845 (AT730_11820) - 2543702..2544193 (+) 492 WP_064368899.1 type II secretion system protein M -
  AT730_RS11850 (AT730_11825) - 2544195..2544956 (+) 762 WP_064368900.1 type II secretion system protein N -
  AT730_RS11855 (AT730_11830) cysQ 2545260..2546087 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AT730_RS11860 (AT730_11835) nudE 2546132..2546701 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  AT730_RS11865 (AT730_11840) nfuA 2546878..2547462 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  AT730_RS11870 (AT730_11845) comF 2547560..2548285 (-) 726 WP_064368901.1 ComF family protein Machinery gene
  AT730_RS11875 (AT730_11850) bioH 2548370..2549137 (+) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  AT730_RS11880 (AT730_11855) - 2549262..2549726 (+) 465 WP_005379316.1 hypothetical protein -
  AT730_RS11885 (AT730_11860) - 2549831..2552152 (-) 2322 WP_005379317.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27748.90 Da        Isoelectric Point: 9.0285

>NTDB_id=163018 AT730_RS11870 WP_064368901.1 2547560..2548285(-) (comF) [Vibrio alginolyticus strain ATCC 33787]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLHWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKQPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=163018 AT730_RS11870 WP_064368901.1 2547560..2548285(-) (comF) [Vibrio alginolyticus strain ATCC 33787]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCACTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAAAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCAACCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473

Multiple sequence alignment