Detailed information NTG0162998

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AT730_RS08215
• Genome accession: NZ_CP013484
• Coordinates: 1796711..1797580 (+)
• Length: 289 a.a.
• NCBI ID: WP_064354291.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain ATCC 33787
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1791711..1802580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AT730_RS08195 (AT730_08180)	nadC	1792107..1792994 (+)	888	WP_005379983.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AT730_RS08200 (AT730_08185)	-	1793256..1793714 (+)	459	WP_064368760.1	pilin	-
AT730_RS08205 (AT730_08190)	pilB	1793714..1795399 (+)	1686	WP_005379975.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AT730_RS08210 (AT730_08195)	pilC	1795423..1796646 (+)	1224	WP_064368761.1	type II secretion system F family protein	Machinery gene
AT730_RS08215 (AT730_08200)	pilD	1796711..1797580 (+)	870	WP_064354291.1	prepilin peptidase	Machinery gene
AT730_RS08220 (AT730_08205)	coaE	1797581..1798195 (+)	615	WP_064354292.1	dephospho-CoA kinase	-
AT730_RS08225 (AT730_08210)	zapD	1798223..1798963 (+)	741	WP_005373086.1	cell division protein ZapD	-
AT730_RS08230 (AT730_08215)	yacG	1799122..1799316 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
AT730_RS08235 (AT730_08220)	rplS	1799800..1800153 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
AT730_RS08240 (AT730_08225)	trmD	1800195..1800956 (-)	762	WP_064354293.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AT730_RS08245 (AT730_08230)	rimM	1800984..1801532 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
AT730_RS08250 (AT730_08235)	rpsP	1801562..1801810 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32537.73 Da
• Isoelectric Point: 7.0197

>NTDB_id=162998 AT730_RS08215 WP_064354291.1 1796711..1797580(+) (pilD) [Vibrio alginolyticus strain ATCC 33787]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=162998 AT730_RS08215 WP_064354291.1 1796711..1797580(+) (pilD) [Vibrio alginolyticus strain ATCC 33787]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTAGATACGATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAGGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	52.222	93.426	0.488
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46