Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   A6L42_RS03365 Genome accession   NZ_CP016671
Coordinates   625506..626183 (+) Length   225 a.a.
NCBI ID   WP_002222553.1    Uniprot ID   Q9JU84
Organism   Neisseria meningitidis strain M22783     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 620506..631183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L42_RS03345 (A6L42_03345) leuD 621311..621952 (-) 642 WP_002234920.1 3-isopropylmalate dehydratase small subunit -
  A6L42_RS03350 (A6L42_03350) - 622014..622268 (-) 255 WP_002213442.1 hypothetical protein -
  A6L42_RS03355 (A6L42_03355) leuC 622365..623774 (-) 1410 WP_002229418.1 3-isopropylmalate dehydratase large subunit -
  A6L42_RS03360 (A6L42_03360) gshA 624034..625383 (+) 1350 WP_002213445.1 glutamate--cysteine ligase -
  A6L42_RS14765 - 625357..625479 (-) 123 WP_255294323.1 hypothetical protein -
  A6L42_RS03365 (A6L42_03365) ysxA/radC 625506..626183 (+) 678 WP_002222553.1 RadC family protein Machinery gene
  A6L42_RS03370 (A6L42_03370) - 626256..626981 (+) 726 WP_002222552.1 epoxyqueuosine reductase QueH -
  A6L42_RS14770 - 627004..627132 (-) 129 WP_009347251.1 hypothetical protein -
  A6L42_RS03375 (A6L42_03375) - 627134..628414 (+) 1281 WP_002225276.1 CAP domain-containing protein -
  A6L42_RS03380 (A6L42_03380) hflX 628419..629597 (+) 1179 WP_002234919.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24990.83 Da        Isoelectric Point: 5.7262

>NTDB_id=162882 A6L42_RS03365 WP_002222553.1 625506..626183(+) (ysxA/radC) [Neisseria meningitidis strain M22783]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=162882 A6L42_RS03365 WP_002222553.1 625506..626183(+) (ysxA/radC) [Neisseria meningitidis strain M22783]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGAAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JU84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378