Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | SCVFeb_RS23925 | Genome accession | NZ_CP013477 |
| Coordinates | 5047067..5047591 (+) | Length | 174 a.a. |
| NCBI ID | WP_003116261.1 | Uniprot ID | Q7WZP2 |
| Organism | Pseudomonas aeruginosa strain SCVFeb | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5042067..5052591
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SCVFeb_RS23905 (SCVFeb_4713) | pilR | 5043329..5044666 (+) | 1338 | WP_034009542.1 | two-component system response regulator PilR | Regulator |
| SCVFeb_RS23910 (SCVFeb_4714) | thiO | 5044712..5045806 (-) | 1095 | WP_034009544.1 | glycine oxidase ThiO | - |
| SCVFeb_RS23915 (SCVFeb_4715) | - | 5045946..5046446 (+) | 501 | WP_003116259.1 | GspH/FimT family pseudopilin | - |
| SCVFeb_RS23920 (SCVFeb_4716) | - | 5046569..5047057 (+) | 489 | WP_003141552.1 | GspH/FimT family pseudopilin | - |
| SCVFeb_RS23925 (SCVFeb_4717) | pilV | 5047067..5047591 (+) | 525 | WP_003116261.1 | type IV pilus modification protein PilV | Machinery gene |
| SCVFeb_RS23930 (SCVFeb_4718) | - | 5047600..5048415 (+) | 816 | WP_003116262.1 | PilW family protein | - |
| SCVFeb_RS23935 (SCVFeb_4719) | - | 5048412..5049017 (+) | 606 | WP_003116263.1 | pilus assembly PilX family protein | - |
| SCVFeb_RS23940 (SCVFeb_4720) | - | 5049031..5052507 (+) | 3477 | WP_003116264.1 | pilus assembly protein | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18763.51 Da Isoelectric Point: 4.9113
>NTDB_id=162861 SCVFeb_RS23925 WP_003116261.1 5047067..5047591(+) (pilV) [Pseudomonas aeruginosa strain SCVFeb]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL
Nucleotide
Download Length: 525 bp
>NTDB_id=162861 SCVFeb_RS23925 WP_003116261.1 5047067..5047591(+) (pilV) [Pseudomonas aeruginosa strain SCVFeb]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Pseudomonas aeruginosa PAK |
59.429 |
100 |
0.598 |