Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | SCVFeb_RS23790 | Genome accession | NZ_CP013477 |
| Coordinates | 5021219..5022091 (+) | Length | 290 a.a. |
| NCBI ID | WP_003116251.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain SCVFeb | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5016219..5027091
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SCVFeb_RS23770 (SCVFeb_4687) | - | 5016762..5017460 (-) | 699 | WP_023121720.1 | hypothetical protein | - |
| SCVFeb_RS23775 | - | 5017524..5018063 (-) | 540 | WP_003116248.1 | pilin | - |
| SCVFeb_RS23780 (SCVFeb_4688) | pilB | 5018292..5019995 (+) | 1704 | WP_003116249.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| SCVFeb_RS23785 (SCVFeb_4689) | pilC | 5019999..5021216 (+) | 1218 | WP_003116250.1 | type II secretion system F family protein | Machinery gene |
| SCVFeb_RS23790 (SCVFeb_4690) | pilD | 5021219..5022091 (+) | 873 | WP_003116251.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| SCVFeb_RS23795 (SCVFeb_4691) | coaE | 5022088..5022699 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| SCVFeb_RS23800 (SCVFeb_4692) | yacG | 5022696..5022896 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| SCVFeb_RS23805 (SCVFeb_4693) | - | 5022933..5023142 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| SCVFeb_RS23810 (SCVFeb_4694) | - | 5023248..5023937 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| SCVFeb_RS23815 (SCVFeb_4695) | - | 5023934..5024404 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| SCVFeb_RS23820 (SCVFeb_4696) | - | 5024401..5024826 (-) | 426 | WP_003116252.1 | GNAT family N-acetyltransferase | - |
| SCVFeb_RS23825 (SCVFeb_4697) | - | 5024959..5025588 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| SCVFeb_RS23830 (SCVFeb_4698) | - | 5025585..5026034 (+) | 450 | WP_003161439.1 | MOSC domain-containing protein | - |
| SCVFeb_RS23835 (SCVFeb_4699) | - | 5026060..5026230 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31871.89 Da Isoelectric Point: 7.3454
>NTDB_id=162857 SCVFeb_RS23790 WP_003116251.1 5021219..5022091(+) (pilD) [Pseudomonas aeruginosa strain SCVFeb]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=162857 SCVFeb_RS23790 WP_003116251.1 5021219..5022091(+) (pilD) [Pseudomonas aeruginosa strain SCVFeb]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.017 |
99.655 |
0.548 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |