Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AT726_RS04370 Genome accession   NZ_CP013476
Coordinates   904160..904726 (-) Length   188 a.a.
NCBI ID   WP_055275180.1    Uniprot ID   A0A0X1TJI9
Organism   Turicibacter sp. H121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 899160..909726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT726_RS04360 (AT726_04340) - 899948..900865 (-) 918 WP_068759135.1 DUF2232 domain-containing protein -
  AT726_RS12990 - 902976..903143 (+) 168 WP_172676274.1 hypothetical protein -
  AT726_RS04365 (AT726_04345) rpsR 903873..904106 (-) 234 WP_006784586.1 30S ribosomal protein S18 -
  AT726_RS04370 (AT726_04350) ssb 904160..904726 (-) 567 WP_055275180.1 single-stranded DNA-binding protein Machinery gene
  AT726_RS04375 (AT726_04355) rpsF 904758..905045 (-) 288 WP_055243505.1 30S ribosomal protein S6 -
  AT726_RS04380 (AT726_04360) ychF 905349..906449 (-) 1101 WP_055243506.1 redox-regulated ATPase YchF -
  AT726_RS04385 (AT726_04365) - 906593..906985 (+) 393 WP_055243507.1 NUDIX domain-containing protein -
  AT726_RS04390 (AT726_04370) - 907031..907795 (-) 765 WP_082704878.1 A24 family peptidase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20184.10 Da        Isoelectric Point: 4.7172

>NTDB_id=162820 AT726_RS04370 WP_055275180.1 904160..904726(-) (ssb) [Turicibacter sp. H121]
MINRVVLVGRLTRDPELKYTTNGIANLRFSIAVNRTFTSQNGERQADFINCVAWRGQAENMAKFLRKGSLIGVEGRIETG
SYQAQDGSMRYTTDVVCDSVQFLEPRSASADRGNFGAQPSQDFGGGFGGGYGGTPSFQQQAPASNGFGGNPFGGAPSMDH
GFGNPSQSFNNEPDFSSTINISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=162820 AT726_RS04370 WP_055275180.1 904160..904726(-) (ssb) [Turicibacter sp. H121]
ATGATTAATCGCGTTGTTTTAGTAGGGCGATTAACTCGTGATCCAGAACTAAAGTATACAACTAATGGGATCGCAAACTT
GCGATTCAGTATTGCGGTTAATCGCACTTTCACTAGTCAAAATGGAGAACGCCAAGCAGATTTCATTAACTGTGTTGCAT
GGCGCGGCCAAGCTGAGAATATGGCGAAGTTTTTACGTAAAGGATCTCTTATTGGAGTGGAAGGACGTATTGAAACAGGT
AGCTATCAGGCTCAGGATGGATCAATGCGTTATACAACAGATGTGGTGTGTGATAGCGTACAGTTCTTAGAACCACGCTC
TGCATCTGCTGATCGAGGAAACTTTGGAGCTCAACCATCACAAGACTTTGGTGGAGGCTTTGGAGGTGGATACGGTGGTA
CGCCATCATTCCAACAACAAGCGCCAGCATCAAATGGCTTTGGTGGAAATCCTTTCGGAGGAGCACCAAGTATGGATCAT
GGCTTCGGAAATCCATCGCAATCATTTAATAATGAGCCAGATTTTAGCTCAACTATTAATATTTCTGATGATGATTTACC
ATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X1TJI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

47.917

100

0.489
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.421

100

0.489

Multiple sequence alignment