Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ATY38_RS09225 Genome accession   NZ_CP013341
Coordinates   2009415..2010851 (-) Length   478 a.a.
NCBI ID   WP_062559039.1    Uniprot ID   A0A0S3AJP7
Organism   Nitrosomonas ureae strain Nm10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2004415..2015851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY38_RS16550 - 2004808..2005128 (+) 321 WP_235590236.1 hypothetical protein -
  ATY38_RS09200 (ATY38_09190) - 2005218..2006294 (-) 1077 WP_062559453.1 IS5 family transposase -
  ATY38_RS09205 (ATY38_09195) - 2006377..2007062 (+) 686 Protein_1839 transposase -
  ATY38_RS09210 (ATY38_09200) corA 2007027..2008166 (-) 1140 WP_062559036.1 magnesium/cobalt transporter CorA -
  ATY38_RS09215 (ATY38_09205) - 2008324..2008527 (-) 204 WP_062559037.1 hypothetical protein -
  ATY38_RS09220 (ATY38_09210) - 2008710..2009288 (+) 579 WP_062559038.1 DUF2780 domain-containing protein -
  ATY38_RS09225 (ATY38_09215) pilR 2009415..2010851 (-) 1437 WP_062559039.1 sigma-54-dependent transcriptional regulator Regulator
  ATY38_RS09230 (ATY38_09220) - 2010842..2012128 (-) 1287 WP_235590237.1 two-component system sensor histidine kinase NtrB -
  ATY38_RS16820 - 2012506..2012733 (-) 228 WP_074702192.1 PP0621 family protein -
  ATY38_RS09240 (ATY38_09230) - 2012952..2013818 (-) 867 WP_062559041.1 YicC/YloC family endoribonuclease -
  ATY38_RS09245 (ATY38_09235) - 2013815..2014762 (-) 948 WP_235590238.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 53498.59 Da        Isoelectric Point: 6.5072

>NTDB_id=162165 ATY38_RS09225 WP_062559039.1 2009415..2010851(-) (pilR) [Nitrosomonas ureae strain Nm10]
MSIDNERINLQKKTLSPRILVVDDEPDIIELLELTLARMGMEVSSATCIHDAKALLQSHSFQLCLTDMRLPDGNGLELVK
YISQHFADVPTAVITAYGTTENAVAALKAGAFDYLPKPVSLKQLRDLVKSALSLPPVKIESAGQGEISQQRTLLGESESM
RQLRVTIDKLSRSQAAVYISGESGSGKELAAKMIHERSARHKQPFVAVNCGAIPENLMESEFFGYKKGAFTGAEKDHDGF
FLTAHGGTLFLDEVADLPLTMQVKLLRVIQEKQVRRIGDAQEKSIDVRIISATHKKLNHCVAMGQFRQDLYYRLNVIELN
MPALREMREDIPLIAEAILEKHCQETNRPICHIKKDAMIMLKNYDFPGNVRELENVLERTLALCSDVDIGIEELQLPNQK
LEATPNNDAAEVTQVSATAIQVRIDHNLPLQDYLDKLEKDSIIKALNESRYNRTKAAKTLGITVRSLRYRMERLGLND

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=162165 ATY38_RS09225 WP_062559039.1 2009415..2010851(-) (pilR) [Nitrosomonas ureae strain Nm10]
ATGTCGATAGATAACGAACGAATTAATCTGCAAAAGAAGACTCTATCTCCCAGAATACTAGTTGTGGATGATGAGCCGGA
TATTATTGAATTGTTAGAACTCACACTTGCCCGAATGGGAATGGAAGTTTCTAGTGCAACGTGTATTCATGATGCCAAAG
CGCTACTGCAATCACACTCCTTTCAATTATGCCTTACCGACATGCGGTTGCCAGATGGTAATGGATTGGAGCTGGTTAAA
TATATTTCACAGCACTTTGCTGATGTTCCCACTGCTGTTATTACTGCGTATGGCACCACAGAAAATGCAGTAGCTGCGCT
GAAAGCAGGCGCTTTTGATTACTTACCCAAGCCGGTTTCCTTGAAGCAGTTACGTGATCTGGTTAAATCGGCTTTAAGCC
TTCCACCGGTAAAGATCGAATCAGCAGGACAAGGTGAAATAAGTCAACAACGTACGCTACTTGGCGAGTCTGAATCCATG
CGCCAGTTACGCGTAACCATCGACAAACTCTCGCGTAGCCAAGCTGCAGTATATATCAGTGGTGAATCGGGTAGCGGTAA
GGAATTAGCCGCAAAAATGATTCATGAAAGAAGTGCGCGCCACAAGCAACCATTTGTTGCAGTCAACTGTGGCGCAATTC
CAGAAAATTTAATGGAAAGTGAATTTTTTGGCTATAAGAAAGGTGCTTTTACTGGCGCGGAAAAAGATCATGATGGATTT
TTTCTGACCGCTCACGGTGGTACCTTGTTTCTTGATGAAGTCGCCGATTTGCCATTAACGATGCAAGTTAAACTGCTCCG
GGTCATTCAGGAAAAACAAGTGAGAAGGATCGGGGATGCACAAGAAAAAAGTATTGATGTGCGGATTATCAGTGCTACCC
ACAAAAAGCTAAATCATTGCGTCGCAATGGGTCAGTTTCGACAGGACTTGTACTACCGTTTGAATGTCATTGAATTGAAT
ATGCCTGCATTACGTGAAATGCGCGAAGATATTCCGCTCATTGCAGAAGCCATTCTGGAAAAACATTGCCAGGAAACCAA
TCGGCCTATCTGTCACATCAAAAAAGATGCCATGATCATGCTCAAGAACTATGATTTTCCAGGTAATGTTCGTGAACTTG
AAAATGTACTGGAACGCACGTTAGCGCTTTGTTCGGATGTGGACATTGGAATAGAAGAATTACAATTGCCGAATCAGAAG
CTTGAAGCGACACCCAACAACGATGCGGCAGAAGTCACCCAAGTTTCCGCCACTGCCATTCAAGTGAGGATAGATCATAA
TCTGCCGCTACAGGATTATCTCGATAAACTGGAAAAAGACTCCATCATCAAAGCGTTGAATGAAAGCCGATACAATCGTA
CTAAGGCAGCTAAAACATTGGGAATCACCGTTCGTTCATTGCGTTATCGGATGGAAAGACTGGGATTAAACGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(19-128)

Bacterial regulatory protein, Fis family (HTH_8)

(434-473)

Sigma-54 interaction domain (Sigma54_activat)

(153-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S3AJP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.304

96.234

0.542
  pilR Acinetobacter baumannii strain A118

46.882

97.28

0.456

Multiple sequence alignment