Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ASZ85_RS05125 Genome accession   NZ_CP013317
Coordinates   1071545..1072912 (+) Length   455 a.a.
NCBI ID   WP_074923884.1    Uniprot ID   -
Organism   Vibrio cholerae strain NCTC5395     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1066545..1077912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASZ85_RS05100 (ASZ85_01009) rsxB 1067034..1067621 (-) 588 WP_000104488.1 electron transport complex subunit RsxB -
  ASZ85_RS05105 (ASZ85_01010) rsxA 1067621..1068202 (-) 582 WP_000141550.1 electron transport complex subunit RsxA -
  ASZ85_RS05115 (ASZ85_01013) uvrB 1069084..1071114 (+) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  ASZ85_RS05125 (ASZ85_01014) luxO 1071545..1072912 (+) 1368 WP_074923884.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ASZ85_RS05130 (ASZ85_01015) luxU 1072916..1073257 (+) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  ASZ85_RS05135 (ASZ85_01016) - 1073246..1074136 (-) 891 WP_000061070.1 YvcK family protein -
  ASZ85_RS05140 (ASZ85_01017) moaA 1074442..1075431 (+) 990 WP_000068572.1 GTP 3',8-cyclase MoaA -
  ASZ85_RS05145 (ASZ85_01018) moaB 1075491..1076003 (+) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  ASZ85_RS05150 (ASZ85_01019) moaC 1076014..1076493 (+) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  ASZ85_RS05155 (ASZ85_01020) moaD 1076490..1076735 (+) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  ASZ85_RS05160 (ASZ85_01021) moaE 1076737..1077189 (+) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50869.10 Da        Isoelectric Point: 5.4182

>NTDB_id=162004 ASZ85_RS05125 WP_074923884.1 1071545..1072912(+) (luxO) [Vibrio cholerae strain NCTC5395]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIEFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=162004 ASZ85_RS05125 WP_074923884.1 1071545..1072912(+) (luxO) [Vibrio cholerae strain NCTC5395]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGAGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment