Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ASZ88_RS05320 Genome accession   NZ_CP013311
Coordinates   1103186..1104553 (+) Length   455 a.a.
NCBI ID   WP_080285632.1    Uniprot ID   -
Organism   Vibrio cholerae strain E1320     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1098186..1109553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASZ88_RS05295 (ASZ88_01012) rsxB 1098675..1099262 (-) 588 WP_000104488.1 electron transport complex subunit RsxB -
  ASZ88_RS05300 (ASZ88_01013) rsxA 1099262..1099843 (-) 582 WP_000141550.1 electron transport complex subunit RsxA -
  ASZ88_RS05310 (ASZ88_01015) uvrB 1100725..1102755 (+) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  ASZ88_RS05320 (ASZ88_01016) luxO 1103186..1104553 (+) 1368 WP_080285632.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ASZ88_RS05325 (ASZ88_01017) luxU 1104557..1104898 (+) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  ASZ88_RS05330 (ASZ88_01018) - 1104887..1105777 (-) 891 WP_000061070.1 YvcK family protein -
  ASZ88_RS05335 (ASZ88_01019) moaA 1106083..1107072 (+) 990 WP_000068572.1 GTP 3',8-cyclase MoaA -
  ASZ88_RS05340 (ASZ88_01020) moaB 1107132..1107644 (+) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  ASZ88_RS05345 (ASZ88_01021) moaC 1107655..1108134 (+) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  ASZ88_RS05350 (ASZ88_01022) moaD 1108131..1108376 (+) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  ASZ88_RS05355 (ASZ88_01023) moaE 1108378..1108830 (+) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50863.10 Da        Isoelectric Point: 5.7411

>NTDB_id=161865 ASZ88_RS05320 WP_080285632.1 1103186..1104553(+) (luxO) [Vibrio cholerae strain E1320]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVHYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=161865 ASZ88_RS05320 WP_080285632.1 1103186..1104553(+) (luxO) [Vibrio cholerae strain E1320]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACACTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment