Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | ASZ80_RS13470 | Genome accession | NZ_CP013301 |
| Coordinates | 2844186..2844776 (-) | Length | 196 a.a. |
| NCBI ID | WP_000157690.1 | Uniprot ID | A0A366AJW1 |
| Organism | Vibrio cholerae strain C5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2839186..2849776
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ASZ80_RS13450 (ASZ80_02649) | aroB | 2840113..2841198 (-) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
| ASZ80_RS13455 (ASZ80_02650) | aroK | 2841226..2841750 (-) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| ASZ80_RS13460 (ASZ80_02651) | pilQ | 2841937..2843652 (-) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| ASZ80_RS13465 (ASZ80_02652) | pilP | 2843678..2844196 (-) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| ASZ80_RS13470 (ASZ80_02653) | pilO | 2844186..2844776 (-) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ASZ80_RS13475 (ASZ80_02654) | pilN | 2844769..2845353 (-) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| ASZ80_RS13480 (ASZ80_02655) | pilM | 2845343..2846359 (-) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| ASZ80_RS13485 (ASZ80_02656) | - | 2846502..2848979 (+) | 2478 | WP_000668733.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22877.27 Da Isoelectric Point: 4.4169
>NTDB_id=161645 ASZ80_RS13470 WP_000157690.1 2844186..2844776(-) (pilO) [Vibrio cholerae strain C5]
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=161645 ASZ80_RS13470 WP_000157690.1 2844186..2844776(-) (pilO) [Vibrio cholerae strain C5]
ATGGCTAGTCTACAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCGACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
ATGGCTAGTCTACAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCGACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilO | Vibrio campbellii strain DS40M4 |
71.958 |
96.429 |
0.694 |