Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ASZ80_RS05315 Genome accession   NZ_CP013301
Coordinates   1100188..1101555 (+) Length   455 a.a.
NCBI ID   WP_080370780.1    Uniprot ID   -
Organism   Vibrio cholerae strain C5     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1095188..1106555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASZ80_RS05290 (ASZ80_01045) rsxB 1095677..1096264 (-) 588 WP_000104488.1 electron transport complex subunit RsxB -
  ASZ80_RS05295 (ASZ80_01046) rsxA 1096264..1096845 (-) 582 WP_000141550.1 electron transport complex subunit RsxA -
  ASZ80_RS05305 (ASZ80_01048) uvrB 1097727..1099757 (+) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  ASZ80_RS05315 (ASZ80_01049) luxO 1100188..1101555 (+) 1368 WP_080370780.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ASZ80_RS05320 (ASZ80_01050) luxU 1101559..1101900 (+) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  ASZ80_RS05325 (ASZ80_01051) - 1101889..1102779 (-) 891 WP_000061070.1 YvcK family protein -
  ASZ80_RS05330 (ASZ80_01052) moaA 1103085..1104074 (+) 990 WP_000068572.1 GTP 3',8-cyclase MoaA -
  ASZ80_RS05335 (ASZ80_01053) moaB 1104134..1104646 (+) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  ASZ80_RS05340 (ASZ80_01054) moaC 1104657..1105136 (+) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  ASZ80_RS05345 (ASZ80_01055) moaD 1105133..1105378 (+) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  ASZ80_RS05350 (ASZ80_01056) moaE 1105380..1105832 (+) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50888.19 Da        Isoelectric Point: 5.5755

>NTDB_id=161627 ASZ80_RS05315 WP_080370780.1 1100188..1101555(+) (luxO) [Vibrio cholerae strain C5]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKYQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=161627 ASZ80_RS05315 WP_080370780.1 1100188..1101555(+) (luxO) [Vibrio cholerae strain C5]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAATATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment