Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ATN06_RS06250 Genome accession   NZ_CP013274
Coordinates   1181186..1183012 (+) Length   608 a.a.
NCBI ID   WP_060629947.1    Uniprot ID   A0A2B1DCM7
Organism   Bacillus thuringiensis strain CTC     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1176186..1188012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN06_RS06230 (ATN06_06015) - 1176493..1177167 (-) 675 WP_060629944.1 TerC family protein -
  ATN06_RS06235 (ATN06_06020) mecA 1177510..1178193 (+) 684 WP_000350711.1 adaptor protein MecA Regulator
  ATN06_RS06240 (ATN06_06025) - 1178266..1179810 (+) 1545 WP_060629945.1 cardiolipin synthase -
  ATN06_RS06245 (ATN06_06030) - 1179891..1181135 (+) 1245 WP_060629946.1 competence protein CoiA -
  ATN06_RS06250 (ATN06_06035) pepF 1181186..1183012 (+) 1827 WP_060629947.1 oligoendopeptidase F Regulator
  ATN06_RS06255 (ATN06_06040) - 1183142..1183315 (-) 174 WP_060629948.1 hypothetical protein -
  ATN06_RS06260 (ATN06_06045) - 1183545..1184438 (-) 894 WP_060629949.1 ClpXP adapter SpxH family protein -
  ATN06_RS06265 (ATN06_06050) - 1184438..1184836 (-) 399 WP_060629950.1 globin -
  ATN06_RS06270 (ATN06_06055) - 1185018..1185596 (-) 579 WP_060629951.1 CYTH domain-containing protein -
  ATN06_RS06275 (ATN06_06060) - 1185741..1186112 (+) 372 WP_048553937.1 hypothetical protein -
  ATN06_RS06280 (ATN06_06065) - 1186143..1186781 (+) 639 WP_060629952.1 GTP pyrophosphokinase -
  ATN06_RS06285 (ATN06_06070) - 1186800..1187597 (+) 798 WP_000673195.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70269.50 Da        Isoelectric Point: 4.6183

>NTDB_id=161276 ATN06_RS06250 WP_060629947.1 1181186..1183012(+) (pepF) [Bacillus thuringiensis strain CTC]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDAEWEKEFQAIKDLLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQSFLKENRDLSIYEHALEEITRQRPHVLSEA
EEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=161276 ATN06_RS06250 WP_060629947.1 1181186..1183012(+) (pepF) [Bacillus thuringiensis strain CTC]
ATGTCTGAACAAAACACAGCAAAAACATTACCAGATCGCAATGAGATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTTCAAGCTATTAAAGATTTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGACCGTGCGACAAATTTATA
TTCACAAGTATCCAGTAGTACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAATCATTCTTGA
AAGAAAATAGAGATTTAAGTATATATGAACATGCATTAGAAGAAATTACGCGTCAACGCCCGCACGTATTATCTGAAGCG
GAAGAGGCTCTATTAGCAGAAGCATCTGAAGTAATGAGTTCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCAATTAAAGGTGAGGATGGAGAAGAAGTAGAAATTACACATGGTCGTTACATTCAATTTTTAGAAAGTG
ATGATCGTCGTGTACGCGAAGATGCATTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCGGTGAAGCGTAATAATTTCAATGCGCGCGTTCGCAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTACGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCACAAGACATGTTATTAAAGTCTTTAAACGTCCTTGGTGATGAGTATGTTGACATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGCCATTCT
GTGCATAGTTACTATACAAGAAAAACGCAGCCGCACGTATACGGTGACTATTCAATCTTTGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCCTTGCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTGAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGACATGCGGTAACACCAGACATGTTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTATCCAATTGAAGTGCTGAAAAAAGCAGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCACTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B1DCM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.253

97.533

0.49

Multiple sequence alignment