Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ATN06_RS00630 Genome accession   NZ_CP013274
Coordinates   78089..79465 (+) Length   458 a.a.
NCBI ID   WP_060629200.1    Uniprot ID   A0A2B1I2Z9
Organism   Bacillus thuringiensis strain CTC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 73089..84465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN06_RS00610 (ATN06_00395) ctsR 73282..73743 (+) 462 WP_060629196.1 transcriptional regulator CtsR -
  ATN06_RS00615 (ATN06_00400) - 73917..74465 (+) 549 WP_060629197.1 UvrB/UvrC motif-containing protein -
  ATN06_RS00620 (ATN06_00405) - 74470..75534 (+) 1065 WP_060629198.1 protein arginine kinase -
  ATN06_RS00625 (ATN06_00410) clpC 75557..77992 (+) 2436 WP_060629199.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  ATN06_RS00630 (ATN06_00415) radA 78089..79465 (+) 1377 WP_060629200.1 DNA repair protein RadA Machinery gene
  ATN06_RS00635 (ATN06_00420) disA 79469..80542 (+) 1074 WP_060629201.1 DNA integrity scanning diadenylate cyclase DisA -
  ATN06_RS00640 (ATN06_00425) - 80703..81812 (+) 1110 WP_060629202.1 PIN/TRAM domain-containing protein -
  ATN06_RS00645 (ATN06_00430) ispD 81829..82509 (+) 681 WP_060629203.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ATN06_RS00650 (ATN06_00435) ispF 82625..83101 (+) 477 WP_000488386.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49866.52 Da        Isoelectric Point: 7.0904

>NTDB_id=161264 ATN06_RS00630 WP_060629200.1 78089..79465(+) (radA) [Bacillus thuringiensis strain CTC]
MAKKKTKFTCQECGYQSPKYMGKCPGCGQWNTLVEEMEPVVSSRRLNYANAIQTEVTKPRRLTEVETKSEARIETKFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSSYDVLYISGEESAKQIKLRADRLDVKGSNLFVVAETDLQRIA
THIEEMNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRAIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=161264 ATN06_RS00630 WP_060629200.1 78089..79465(+) (radA) [Bacillus thuringiensis strain CTC]
ATGGCTAAAAAGAAAACAAAATTCACATGTCAAGAGTGTGGTTATCAGTCACCGAAATATATGGGGAAGTGCCCCGGATG
TGGTCAATGGAATACGCTTGTTGAAGAGATGGAACCGGTTGTATCATCAAGGCGCCTTAATTATGCCAATGCAATTCAAA
CAGAAGTAACAAAACCAAGACGTCTTACAGAAGTAGAAACAAAGTCTGAGGCGCGTATTGAAACAAAATTTCAAGAATTT
AACCGTGTACTTGGTGGTGGAATCGTAGATGGATCTTTAGTACTTATCGGCGGGGACCCTGGGATTGGAAAATCAACGTT
GTTATTACAGATTTCATCGCAATTAGCAGATTCTTCATATGATGTACTCTACATATCGGGTGAGGAGTCAGCAAAGCAGA
TAAAACTTCGTGCAGATCGTTTAGATGTAAAGGGTAGTAATTTATTTGTTGTAGCAGAGACGGATTTGCAGCGAATTGCA
ACACACATTGAAGAGATGAATCCGGCCTTTGTTGTTATTGATTCCATTCAAACGATACATTTACCAGAGGTAACGTCAGC
ACCAGGAAGTGTGGCACAAGTACGTGAATGTACAGCAGAGTTAATGAAACTTGCAAAAACGAAAGGAATCCCTATTTTTA
TCGTCGGACACGTGACAAAAGAAGGTGCAATTGCAGGACCACGTATGTTAGAACATATGGTCGACGCAGTTCTTTACTTT
GAAGGAGACCGTCATCATACATATCGTATTTTGCGAGCTGTTAAGAATCGTTTTGGTTCTACGAATGAAATGGGTATTTT
TGAAATGAAAGAACTTGGCCTTGCGGAAGTCTTAAACCCGTCTGAAATTTTCCTTGAGGAAAGACCTGTTGGGGTTGCAG
GATCAACCGTGGTAGCCTCAATGGAAGGAACAAGACCAGTGTTAGTAGAAATACAAGCATTAATCTCCCCTACTAGTTTT
GGAAACCCTCGAAGAATGGCAACGGGAATTGATCATAACCGTGTATCTCTTATTATGGCGGTGCTAGAAAAAAGAACAGG
TTTATTATTGCAAAATCAAGACGCATATTTAAAAGTGGCGGGTGGTTTGAAATTAGATGAACCAGCAATTGATTTAGCGG
TGGCTTTAAGTATAGCTTCAAGTTTTAGAGATAAATCTACGGCACCAACCGATGCAGTAATAGGAGAAGTCGGATTAACT
GGAGAAATAAGAAGAGTATCAAGAATTGAACAACGTGTACAAGAAGCGGCTAAATTAGGATTTCAACGTGCTATTATTCC
TAGAAAAAATTTGGGAGGATGGACAATTCCGGATGGGATTGAGGTAGTAGGTGTATCTAATTTAGGGGAAGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

AAA domain (AAA_25)

(60-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B1I2Z9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.728

100

0.749
  radA Streptococcus mitis NCTC 12261

64.018

98.908

0.633
  radA Streptococcus pneumoniae Rx1

63.797

98.908

0.631
  radA Streptococcus pneumoniae D39

63.797

98.908

0.631
  radA Streptococcus pneumoniae R6

63.797

98.908

0.631
  radA Streptococcus pneumoniae TIGR4

63.797

98.908

0.631
  radA Streptococcus mitis SK321

63.797

98.908

0.631

Multiple sequence alignment