Detailed information NTG0161117

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ATC05_RS16345
• Genome accession: NZ_CP013245
• Coordinates: 3534499..3535371 (-)
• Length: 290 a.a.
• NCBI ID: WP_003455739.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain VA-134
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3529499..3540371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ATC05_RS16300 (ATC05_16290)	-	3530360..3530530 (-)	171	WP_003094672.1	DUF3094 family protein	-
ATC05_RS16305 (ATC05_16295)	-	3530556..3531005 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
ATC05_RS16310 (ATC05_16300)	-	3531002..3531631 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
ATC05_RS16315 (ATC05_16305)	-	3531764..3532189 (+)	426	WP_003116252.1	GNAT family N-acetyltransferase	-
ATC05_RS16320 (ATC05_16310)	-	3532186..3532656 (+)	471	WP_003094664.1	hypothetical protein	-
ATC05_RS16325 (ATC05_16315)	-	3532653..3533342 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
ATC05_RS16330 (ATC05_16320)	-	3533448..3533657 (+)	210	WP_003094660.1	hypothetical protein	-
ATC05_RS16335 (ATC05_16325)	yacG	3533694..3533894 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
ATC05_RS16340 (ATC05_16330)	coaE	3533891..3534502 (-)	612	WP_003112838.1	dephospho-CoA kinase	-
ATC05_RS16345 (ATC05_16335)	pilD	3534499..3535371 (-)	873	WP_003455739.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
ATC05_RS16350 (ATC05_16340)	pilC	3535372..3536589 (-)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
ATC05_RS16355 (ATC05_16345)	pilB	3536593..3538293 (-)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ATC05_RS16360 (ATC05_16350)	-	3538524..3538988 (+)	465	WP_003455732.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31771.81 Da
• Isoelectric Point: 8.0434

>NTDB_id=161117 ATC05_RS16345 WP_003455739.1 3534499..3535371(-) (pilD) [Pseudomonas aeruginosa strain VA-134]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDAAHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=161117 ATC05_RS16345 WP_003455739.1 3534499..3535371(-) (pilD) [Pseudomonas aeruginosa strain VA-134]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTACTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGCTCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.177	97.586	0.49
pilD	Acinetobacter baumannii D1279779	50.177	97.586	0.49
pilD	Neisseria gonorrhoeae MS11	48.561	95.862	0.466