Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NPD7_RS11545 Genome accession   NZ_CP013242
Coordinates   2206527..2207480 (-) Length   317 a.a.
NCBI ID   WP_096044390.1    Uniprot ID   -
Organism   Clostridium sporogenes strain CDC_67071     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2201527..2212480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPD7_RS11520 (NPD7_2015) - 2202618..2203619 (-) 1002 WP_096044387.1 helix-turn-helix domain-containing protein -
  NPD7_RS11530 (NPD7_2016) - 2203821..2204765 (-) 945 WP_096044388.1 siderophore ABC transporter substrate-binding protein -
  NPD7_RS11535 (NPD7_2017) - 2204835..2205590 (-) 756 WP_045897888.1 ABC transporter ATP-binding protein -
  NPD7_RS11540 (NPD7_2018) - 2205587..2206537 (-) 951 WP_096044389.1 iron chelate uptake ABC transporter family permease subunit -
  NPD7_RS11545 (NPD7_2019) ceuB 2206527..2207480 (-) 954 WP_096044390.1 ABC transporter permease Machinery gene
  NPD7_RS11550 (NPD7_2020) - 2207725..2208483 (+) 759 WP_096044391.1 helix-turn-helix domain-containing protein -
  NPD7_RS11555 (NPD7_2021) - 2208640..2210046 (-) 1407 WP_096044392.1 sensor histidine kinase -
  NPD7_RS11560 (NPD7_2022) - 2210046..2210747 (-) 702 WP_043031717.1 response regulator transcription factor -
  NPD7_RS11565 (NPD7_2023) - 2211009..2211245 (-) 237 WP_045897886.1 SHOCT domain-containing protein -
  NPD7_RS21595 (NPD7_2024) - 2211387..2211509 (+) 123 WP_257786998.1 hypothetical protein -
  NPD7_RS11570 (NPD7_2025) - 2211617..2211925 (-) 309 WP_045898234.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34870.18 Da        Isoelectric Point: 10.0770

>NTDB_id=161053 NPD7_RS11545 WP_096044390.1 2206527..2207480(-) (ceuB) [Clostridium sporogenes strain CDC_67071]
MKKRYLILALIILSICSIFIGVKDISFVDIFNSDDVKLKVLLISRIPRLISIIVVGGSMSIAGLIMQQISRNKFVSPDTA
STVDSAKLGILVALMIFPSATLIEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYLSLPIVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLYSTALLGSVFLLGCDILGRLIIYPYEISIGLVVGVIGSTVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=161053 NPD7_RS11545 WP_096044390.1 2206527..2207480(-) (ceuB) [Clostridium sporogenes strain CDC_67071]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TGTAGATATATTTAATTCAGATGATGTAAAGCTTAAGGTATTATTAATAAGTAGAATTCCAAGACTTATAAGTATTATTG
TAGTAGGAGGGAGTATGAGTATAGCAGGACTTATCATGCAACAAATAAGTCGGAATAAATTCGTATCACCAGATACAGCT
TCAACTGTAGATAGTGCAAAACTTGGGATTTTGGTTGCTTTAATGATATTTCCTTCCGCAACTCTCATTGAAAAAATGAT
AGTTTCTTTCATATTTTCTTTATTAGGCACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATAT
TTATACCACTTGTAGGTATAATGCTTGGGAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATAATCTTATT
CAAAGTATAGCCTCCTGGCTTCAAGGAGATTTTTCTTTAATTATTAAAGGAAATTATGAGCTTATATATCTGAGTCTACC
TATTGTAGTCATAGCTTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTCTCTAAGAATTTAGGGG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTGGTAGTTATTACTGTAGGAAAA
ATACCATTTTTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGAGATAATTTAAAAAATAGTCTTTATAGTAC
AGCATTGCTTGGATCAGTATTTCTCTTAGGCTGTGACATACTAGGTAGATTAATTATTTATCCTTATGAAATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTACAGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.804

98.107

0.498

Multiple sequence alignment