Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   APQ13_RS06595 Genome accession   NZ_CP013237
Coordinates   1377587..1378513 (-) Length   308 a.a.
NCBI ID   WP_002267002.1    Uniprot ID   A0AAX1K1D7
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1372587..1383513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS06580 (APQ13_06565) ptcA 1373901..1374920 (-) 1020 WP_002282737.1 putrescine carbamoyltransferase -
  APQ13_RS06585 (APQ13_06570) - 1375159..1376124 (+) 966 WP_002263993.1 helix-turn-helix transcriptional regulator -
  APQ13_RS06590 (APQ13_06575) - 1376341..1376943 (-) 603 WP_002273611.1 nitroreductase family protein -
  APQ13_RS06595 (APQ13_06580) amiF 1377587..1378513 (-) 927 WP_002267002.1 ABC transporter ATP-binding protein Regulator
  APQ13_RS06600 (APQ13_06585) oppD 1378506..1379558 (-) 1053 WP_002289581.1 ABC transporter ATP-binding protein Regulator
  APQ13_RS06605 (APQ13_06590) - 1379568..1380599 (-) 1032 WP_002263989.1 ABC transporter permease -
  APQ13_RS06610 (APQ13_06595) - 1380610..1381524 (-) 915 WP_002262739.1 ABC transporter permease -
  APQ13_RS06615 (APQ13_06600) - 1381630..1383279 (-) 1650 WP_002265823.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34842.97 Da        Isoelectric Point: 7.3331

>NTDB_id=160990 APQ13_RS06595 WP_002267002.1 1377587..1378513(-) (amiF) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MTENRKKLVEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGTSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPGHFVLATEEEAKAYKKK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=160990 APQ13_RS06595 WP_002267002.1 1377587..1378513(-) (amiF) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGACTGAAAATCGTAAAAAACTAGTTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCTATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGCTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTTGAAGGCGAAACGATTTCAAAATTA
AAGGGAAAGTCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGCGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATTGGGACATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCCAGTTTTAGAACGTCA
ACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGATGGGCAGGAACGGGAAATGAGAGAAATTACACCGGGGCATT
TTGTTTTAGCAACAGAAGAAGAGGCAAAAGCCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.066

99.026

0.555
  amiF Streptococcus thermophilus LMG 18311

55.738

99.026

0.552
  amiF Streptococcus salivarius strain HSISS4

55.738

99.026

0.552

Multiple sequence alignment