Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   APQ13_RS04805 Genome accession   NZ_CP013237
Coordinates   1011896..1013695 (-) Length   599 a.a.
NCBI ID   WP_002289483.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1006896..1018695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS04785 (APQ13_04780) - 1008503..1009003 (-) 501 WP_002265403.1 LURP-one-related/scramblase family protein -
  APQ13_RS04790 (APQ13_04785) prsA 1009242..1010243 (-) 1002 WP_002289075.1 peptidylprolyl isomerase PrsA -
  APQ13_RS04795 (APQ13_04790) - 1010305..1011012 (-) 708 WP_002270611.1 O-methyltransferase -
  APQ13_RS04800 (APQ13_04795) - 1011062..1011679 (-) 618 WP_002261895.1 HAD-IA family hydrolase -
  APQ13_RS04805 (APQ13_04800) pepF 1011896..1013695 (-) 1800 WP_002289483.1 oligoendopeptidase F Regulator
  APQ13_RS04810 (APQ13_04805) - 1013717..1014655 (-) 939 WP_002289482.1 competence protein CoiA -
  APQ13_RS04815 (APQ13_04810) - 1014961..1015854 (-) 894 WP_002271023.1 alpha/beta hydrolase -
  APQ13_RS04820 (APQ13_04815) - 1015960..1016241 (-) 282 WP_002265397.1 hypothetical protein -
  APQ13_RS04825 (APQ13_04820) - 1016486..1017454 (-) 969 WP_002261900.1 alcohol dehydrogenase catalytic domain-containing protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69862.62 Da        Isoelectric Point: 4.8843

>NTDB_id=160976 APQ13_RS04805 WP_002289483.1 1011896..1013695(-) (pepF) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MSDNRSHIEEKYQWDLTSIFPNDQTWEKEEKSLAKDLEIAVKRAGHLLDSSQSLLEITELYLALSRRLEKLYVYASMKND
QDTTVSYYQELQAKATALIAKFNQTFAFYEPEFMLLSTEKYQDFLADCPDLLPYQHFFEKLFKQKKHVLSQKEEALLAEA
SEIFGAAGETFEILDNADIIFPWVKDETGEEVELSHGNFISLMESKNRKVRQEAYKAMYRIYEQYQHTYAKTLQTNVKVN
NFQAKIRNYKSAREAALAANFIPETVYDTLVEAVHNHLPLLQRYVKLRQNVLGLDDLKMYDIYVPLSEMDMTFTYEAALD
KAEEVLAIFGRDYAERVHRAFRERWIDVRVNKGKRSGAYSGGSYDTNAFILLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTEMLLKEVNDEKQRFAILNHYLDGFKGTVFRQTQFAEFEDLIYKADQAGDVLTSDY
LNNLYADLNEKYYGLSKKNNPEIQYEWARIPHFYYNFYVYQYATGFAAASFLAHKIVHGNQEDKDKYLNYLKAGNSDYPL
NVIAKAGLDMTESTYIDQAFKVFEERLIELKELVEKGID

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=160976 APQ13_RS04805 WP_002289483.1 1011896..1013695(-) (pepF) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGTCTGATAATCGCAGTCATATTGAAGAAAAATACCAATGGGATTTGACCAGCATTTTTCCAAACGATCAAACTTGGGA
AAAAGAGGAGAAATCTTTAGCTAAGGATTTGGAAATAGCCGTTAAAAGAGCAGGTCATCTGCTTGACTCCAGTCAAAGTC
TGCTGGAGATCACAGAACTTTATCTGGCTTTGAGCCGTCGTTTGGAAAAACTTTATGTTTATGCTTCTATGAAGAATGAC
CAAGACACCACGGTCAGTTACTATCAAGAATTACAAGCTAAGGCAACAGCCTTGATCGCTAAATTTAATCAGACTTTTGC
CTTCTATGAGCCTGAATTTATGCTGTTATCAACAGAAAAATATCAGGATTTTTTGGCAGATTGTCCGGATTTATTGCCTT
ATCAACATTTTTTTGAAAAATTATTCAAACAAAAAAAGCATGTTCTTTCTCAAAAGGAAGAGGCACTTTTGGCTGAAGCC
AGTGAAATTTTTGGTGCTGCTGGTGAAACCTTTGAAATTCTTGACAATGCCGATATTATCTTTCCTTGGGTAAAAGACGA
GACAGGAGAAGAAGTTGAACTATCTCATGGTAATTTCATCAGTTTGATGGAATCCAAAAACCGCAAAGTTCGACAAGAAG
CTTATAAGGCCATGTACAGGATTTATGAGCAGTATCAACACACCTATGCTAAAACGCTGCAAACCAATGTTAAAGTTAAT
AATTTTCAAGCGAAAATCAGAAACTATAAGAGTGCGCGTGAAGCTGCTCTGGCAGCTAATTTTATTCCCGAAACTGTTTA
TGACACTTTAGTAGAAGCGGTCCATAATCACTTACCTTTGTTACAGCGTTATGTGAAGCTAAGGCAAAACGTTTTAGGCC
TTGATGATCTTAAGATGTATGATATTTACGTACCACTCTCAGAAATGGATATGACTTTTACTTATGAAGCAGCCTTGGAC
AAAGCAGAAGAAGTGTTAGCTATTTTTGGGCGAGACTATGCTGAGCGTGTGCATCGTGCATTTAGGGAGCGTTGGATTGA
TGTACGAGTCAATAAAGGCAAGCGTTCAGGCGCTTATTCAGGCGGATCCTATGACACCAATGCTTTTATATTACTTAATT
GGCAGGATACCTTGGATAATCTCTTCACTCTTGTTCATGAAACAGGACATTCTCTGCATTCTACTTTTACACGTGAAAAC
CAACCCTATGTTTATGGTGATTATTCTATTTTTCTGGCAGAAATTGCTTCGACAACCAATGAAAATATTTTAACTGAAAT
GCTTCTCAAAGAGGTAAATGATGAAAAGCAACGTTTTGCGATTTTGAATCATTATCTTGATGGTTTCAAAGGAACGGTTT
TCCGCCAAACACAATTTGCAGAATTTGAAGACTTGATTTATAAGGCTGATCAAGCAGGTGACGTTTTGACCAGTGATTAT
TTGAATAATCTCTATGCGGATCTCAATGAAAAATACTATGGTTTAAGCAAGAAAAATAATCCGGAAATTCAGTATGAATG
GGCTAGGATTCCGCATTTCTATTACAATTTTTATGTTTATCAGTATGCCACAGGCTTTGCTGCAGCTAGTTTTTTGGCTC
ACAAAATTGTTCATGGCAATCAAGAAGATAAGGACAAATATCTCAATTATCTCAAAGCTGGCAATTCAGACTATCCTCTC
AATGTTATTGCTAAAGCAGGTCTTGATATGACTGAGTCGACCTATATTGACCAAGCCTTCAAAGTCTTTGAAGAACGGTT
AATAGAGTTGAAAGAGTTGGTCGAAAAAGGAATTGATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.064

99.833

0.689

Multiple sequence alignment