Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CPter291_RS22030 Genome accession   NZ_CP013236
Coordinates   4923482..4924966 (-) Length   494 a.a.
NCBI ID   WP_062119134.1    Uniprot ID   -
Organism   Collimonas pratensis strain Ter291     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4918482..4929966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPter291_RS22020 (CPter291_4656) - 4919386..4922310 (-) 2925 WP_062119131.1 ribonucleoside-diphosphate reductase subunit alpha -
  CPter291_RS22025 (CPter291_4658) ampD 4922831..4923469 (-) 639 WP_061944324.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CPter291_RS22030 (CPter291_4659) pilR 4923482..4924966 (-) 1485 WP_062119134.1 sigma-54-dependent transcriptional regulator Regulator
  CPter291_RS22035 (CPter291_4660) - 4924993..4926732 (-) 1740 WP_062119137.1 two-component system sensor histidine kinase NtrB -
  CPter291_RS22040 (CPter291_4661) - 4926736..4927002 (-) 267 WP_062119140.1 PP0621 family protein -
  CPter291_RS22045 (CPter291_4662) - 4926999..4927808 (-) 810 WP_062119143.1 cytochrome C assembly family protein -
  CPter291_RS22050 (CPter291_4663) ffh 4928101..4929468 (+) 1368 WP_062119146.1 signal recognition particle protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52884.68 Da        Isoelectric Point: 5.0641

>NTDB_id=160950 CPter291_RS22030 WP_062119134.1 4923482..4924966(-) (pilR) [Collimonas pratensis strain Ter291]
MTSPRILVVDDEAHLRELLEIALVKMGLDVDSADSLAAARSHLASNDYALILSDMRLPDGLGIELVREVTSGDKVIPIAV
ITAYGSADNAVVALKAGAFDYLSKPVALDQLRLMVQSALRIGKPAENPRQPGDVKTRGNGSGNALRLIGQSAAMQELRTQ
IVRLARSMAPVAITGESGSGKELAARDIHALSPRADKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADDREGFFQAANG
GTLLLDEVADLPLAMQVKLLRAIQERRVRKVGATVEEPVDVRLISATHQNLAECVESGRFRQDLYYRLNVIELKLPPLRE
RLDDLGLLIGAVLARLSVFAPQAGPVTLAPAAMDALCTYAFPGNVRELENILERALAFANDGVIEVADLGLKGGGNSRAL
EAQSLDDGYPDAGVGVAGIAVVGLEPVAVAAAALPGGAELPPSLPDYLDDIERDVIRRALTRTHFNRTKAADLLGISFRQ
LRYRMQRLSIHEQD

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=160950 CPter291_RS22030 WP_062119134.1 4923482..4924966(-) (pilR) [Collimonas pratensis strain Ter291]
ATGACTTCACCCCGTATTCTGGTCGTCGATGACGAAGCCCATCTGCGCGAGCTGCTAGAAATAGCGCTGGTCAAGATGGG
ACTCGATGTCGACAGTGCTGACAGCCTGGCCGCCGCGCGCAGCCATCTGGCCAGCAATGACTATGCACTGATCCTGAGCG
ACATGCGGCTGCCGGACGGCCTCGGCATCGAGCTGGTGCGCGAAGTCACCAGCGGCGACAAGGTGATTCCGATCGCCGTG
ATCACGGCCTATGGCAGCGCCGACAACGCCGTGGTGGCGTTGAAAGCCGGCGCTTTCGACTATTTGTCGAAGCCGGTGGC
CCTGGATCAGCTGCGCCTGATGGTGCAATCGGCGCTGCGCATCGGCAAGCCGGCCGAGAATCCGCGCCAGCCCGGCGACG
TCAAAACGCGCGGTAATGGCAGTGGCAACGCCTTGCGCCTGATCGGCCAGTCCGCCGCCATGCAGGAATTGCGGACCCAG
ATTGTACGGTTGGCGCGCAGCATGGCGCCGGTGGCGATTACCGGCGAGTCCGGCAGCGGCAAGGAACTGGCGGCGCGCGA
TATCCATGCGCTTAGCCCACGCGCCGACAAGCCGTTTGTCGCCGTCAATTGCGGCGCCATCCCGGAAGCCTTGATGGAGG
CCGAGTTCTTCGGCTACCGCAAAGGCGCATTTACTGGCGCCGCCGACGACCGCGAAGGATTTTTCCAGGCGGCCAATGGC
GGCACCCTGCTGCTGGACGAGGTCGCCGACCTGCCGCTGGCGATGCAGGTCAAGCTGTTGCGCGCGATCCAGGAGCGGCG
CGTGCGCAAGGTTGGGGCGACGGTGGAAGAGCCGGTGGATGTCCGTTTGATCAGCGCCACCCATCAGAATCTGGCCGAGT
GTGTCGAATCAGGTAGATTTCGCCAGGATTTGTACTATCGTTTGAATGTTATCGAATTAAAACTGCCGCCTTTGCGGGAG
CGCCTGGACGATCTTGGCTTGCTGATCGGCGCGGTGCTGGCGCGCTTGTCGGTGTTTGCACCGCAGGCGGGGCCGGTGAC
GCTGGCGCCGGCAGCCATGGACGCTTTGTGCACCTATGCCTTTCCGGGCAATGTGCGCGAGCTGGAAAATATCCTGGAGC
GGGCGCTGGCGTTTGCCAACGACGGTGTGATTGAAGTAGCGGATCTCGGCCTCAAGGGCGGCGGCAATAGTCGTGCGCTG
GAAGCGCAAAGCCTGGATGACGGCTATCCCGATGCTGGCGTAGGTGTGGCGGGCATCGCGGTGGTCGGATTGGAGCCGGT
TGCTGTCGCAGCGGCAGCGTTGCCGGGCGGCGCCGAGTTGCCGCCCTCGCTGCCGGACTACCTGGATGATATCGAGCGAG
ATGTCATCCGGCGGGCACTGACCCGCACGCATTTTAACCGGACCAAGGCGGCCGACCTGCTGGGCATCAGCTTCCGCCAG
TTGCGCTATCGCATGCAGCGCCTATCGATTCACGAGCAGGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(448-488)

Sigma-54 interaction domain (Sigma54_activat)

(147-313)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

50.505

100

0.506
  pilR Acinetobacter baumannii strain A118

43.117

100

0.431

Multiple sequence alignment