Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CPter91_RS14560 Genome accession   NZ_CP013234
Coordinates   3256172..3257542 (-) Length   456 a.a.
NCBI ID   WP_061941478.1    Uniprot ID   A0A127Q638
Organism   Collimonas pratensis strain Ter91     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3251172..3262542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPter91_RS14540 (CPter91_3153) - 3252029..3252934 (+) 906 WP_061941469.1 LysR family transcriptional regulator -
  CPter91_RS14545 (CPter91_3155) - 3253261..3253983 (+) 723 WP_417924820.1 TerC family protein -
  CPter91_RS14550 (CPter91_3156) fghA 3254125..3254979 (-) 855 WP_061941473.1 S-formylglutathione hydrolase -
  CPter91_RS14555 (CPter91_3157) - 3254979..3256085 (-) 1107 WP_061941475.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
  CPter91_RS14560 (CPter91_3158) radA 3256172..3257542 (-) 1371 WP_061941478.1 DNA repair protein RadA Machinery gene
  CPter91_RS14565 (CPter91_3159) alr 3257629..3258705 (-) 1077 WP_061941480.1 alanine racemase -
  CPter91_RS14570 (CPter91_3160) lplT 3258893..3260155 (+) 1263 WP_061941482.1 lysophospholipid transporter LplT -
  CPter91_RS14575 (CPter91_3161) - 3260179..3261183 (-) 1005 WP_061941484.1 DUF1853 family protein -
  CPter91_RS14580 (CPter91_3162) - 3261164..3262066 (-) 903 WP_061941486.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48562.08 Da        Isoelectric Point: 7.1757

>NTDB_id=160903 CPter91_RS14560 WP_061941478.1 3256172..3257542(-) (radA) [Collimonas pratensis strain Ter91]
MAKAKTNYTCTECGGIANKWTGQCPSCGQWNTLVETIVEAVGNRFSNQHQGLAQTAPVMTLADIEAIDVPRFGTGIEEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSKIKKVLYVSGEESGAQIALRAKRLAVDAGDLRLQAEIQLEKILNT
LVEHKPEVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRVAKQSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDSQVPGSCVMVTQEGTRPLLVEIQALVDASHVPN
ARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNRPLPRGLVVFGEVGLAGE
IRPAPRGQERLREAAKLGFSIAMIPKANMPKQEIEGLKVIGVERIDDALSKIRDAE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=160903 CPter91_RS14560 WP_061941478.1 3256172..3257542(-) (radA) [Collimonas pratensis strain Ter91]
ATGGCCAAAGCTAAAACCAATTACACCTGTACCGAATGCGGCGGCATCGCCAATAAATGGACCGGCCAGTGTCCCTCGTG
CGGGCAGTGGAATACGCTGGTGGAAACCATCGTGGAAGCGGTCGGCAACCGTTTTTCCAACCAGCACCAGGGCTTGGCGC
AGACGGCGCCGGTGATGACCCTGGCCGATATCGAAGCGATCGATGTGCCGCGCTTCGGCACCGGCATCGAAGAATTCGAC
CGCGTGCTGGGCGGCGGCCTGGTGGCTGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACCTTGCT
GCTGCAGGCGCTGGCGAATCTTTCCAAGATCAAGAAAGTGCTGTACGTCAGCGGCGAAGAGTCGGGTGCGCAGATTGCCT
TGCGCGCCAAGCGCCTGGCGGTGGATGCCGGCGACCTGCGCCTGCAGGCGGAAATCCAGCTGGAAAAAATCCTCAACACC
CTGGTGGAGCACAAGCCGGAAGTGGCGGTGATCGATTCGATCCAGACAGTCTATTCGGATGCGCTCAGCTCTGCTCCCGG
TTCGGTGGCGCAGGTGCGTGAATGCGCGGCGCAGCTGACGCGGGTCGCCAAGCAGTCCGGCATCACCATCATCATGGTCG
GCCACGTCACCAAGGAAGGTGCGCTGGCGGGGCCGCGCGTGCTGGAGCATATCGTCGATACCGTGCTGTACTTCGAAGGC
GACACCCATTCCAGTTTCCGCCTGGTGCGGGCGTTCAAGAACCGCTTCGGCGCCGTCAACGAACTCGGCGTGTTCGCCAT
GACCGAAAAAGGTCTGAAGGGCGTGTCGAACCCGTCGGCGCTGTTCCTTTCGCAGCACGACAGCCAGGTGCCGGGTTCCT
GCGTGATGGTGACACAGGAAGGCACGCGGCCCTTGCTGGTGGAAATCCAGGCCCTGGTCGACGCCTCGCACGTGCCGAAC
GCGCGGCGGCTATCGGTGGGGCTGGAACAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCATGCCGGCATCGC
GGCGTTCGACCAGGACGTCTTCATCAACGCCGTCGGCGGCGTCAAGATCACCGAGCCGGCCGCCGATCTGGCAGTGCTGC
TGGCGATCAATTCCTCCATGCGTAACCGGCCGCTGCCGCGCGGGCTGGTGGTGTTCGGCGAAGTCGGCCTGGCCGGCGAG
ATCCGGCCGGCGCCGCGCGGCCAGGAACGCCTGCGCGAAGCCGCCAAGCTGGGTTTTTCGATTGCCATGATTCCCAAGGC
GAACATGCCGAAACAAGAGATCGAAGGCTTGAAAGTGATCGGCGTAGAACGCATCGATGACGCCCTGAGCAAGATACGTG
ACGCCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127Q638

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.451

99.781

0.493
  radA Streptococcus mitis NCTC 12261

48.246

100

0.482
  radA Streptococcus mitis SK321

48.246

100

0.482
  radA Streptococcus pneumoniae Rx1

47.921

100

0.48
  radA Streptococcus pneumoniae D39

47.921

100

0.48
  radA Streptococcus pneumoniae R6

47.921

100

0.48
  radA Streptococcus pneumoniae TIGR4

47.921

100

0.48

Multiple sequence alignment