Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CPter91_RS02515 Genome accession   NZ_CP013234
Coordinates   558509..559990 (-) Length   493 a.a.
NCBI ID   WP_061936483.1    Uniprot ID   A0A127PYS0
Organism   Collimonas pratensis strain Ter91     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553509..564990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPter91_RS02495 (CPter91_0538) aroKB 554132..555910 (+) 1779 WP_269465561.1 bifunctional shikimate kinase/3-dehydroquinate synthase AroKB -
  CPter91_RS02500 (CPter91_0539) - 555907..557064 (+) 1158 WP_061936474.1 deoxyguanosinetriphosphate triphosphohydrolase -
  CPter91_RS02505 (CPter91_0540) - 557184..557873 (+) 690 WP_061936477.1 DUF4197 domain-containing protein -
  CPter91_RS02510 (CPter91_0541) hpf 557995..558345 (-) 351 WP_061936480.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CPter91_RS02515 (CPter91_0542) rpoN/rpoN1 558509..559990 (-) 1482 WP_061936483.1 RNA polymerase factor sigma-54 Machinery gene
  CPter91_RS02520 (CPter91_0543) lptB 560100..560846 (-) 747 WP_061936486.1 LPS export ABC transporter ATP-binding protein -
  CPter91_RS02525 (CPter91_0544) lptA 560843..561385 (-) 543 WP_061936489.1 lipopolysaccharide transport periplasmic protein LptA -
  CPter91_RS02530 (CPter91_0545) lptC 561439..562044 (-) 606 WP_061936492.1 LPS export ABC transporter periplasmic protein LptC -
  CPter91_RS02535 (CPter91_0546) - 562041..562625 (-) 585 WP_061945758.1 KdsC family phosphatase -
  CPter91_RS02540 (CPter91_0547) - 562658..563689 (-) 1032 WP_061945760.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 55006.51 Da        Isoelectric Point: 5.0380

>NTDB_id=160892 CPter91_RS02515 WP_061936483.1 558509..559990(-) (rpoN/rpoN1) [Collimonas pratensis strain Ter91]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPMLERVDDPLDNSVRLLADGAISGTASTMEAPTGDS
EVSSSPTESEASLETPAAADSSSDNSDSDWSFDDISRSAKSSDDEDARPQLEAHESTLREHLLQQMREAMRDLRDRALVE
LVIDALDDNGYLEESLEEILERLPPELEIALEELSMALKMVQSFDPAGVGARNAPECLGLQIKRFVKVPFVTRRLALAIV
QEHLVLFAQRDFNKIKKALDCDDEDLREAQTVIKQCNPHPGAPFAGNASDYVVPDVIVRRSKQGWQVMLNNDVMPRLRVN
VLYANILKQSKGDGALTSQLQEAKWLIKNMRQRFDTILRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISR
VTTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIKQLIGAEDSRNPFSDSKIADMLAEQGMVVARRTVAKYRE
ALKIPSVNLRKAL

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=160892 CPter91_RS02515 WP_061936483.1 558509..559990(-) (rpoN/rpoN1) [Collimonas pratensis strain Ter91]
ATGAAACAATCACTCCAGCTACGCACCTCTCAACATCTTGCGCTGACGCCTCAGCTGCAGCAGTCGATCCGCCTGCTGCA
GCTGTCCACGCTCGAGTTGCATCAGGAACTGGAACAGATCCTGTCGGACAATCCGATGCTCGAACGGGTCGACGATCCGC
TCGACAATTCAGTGCGGCTGCTGGCGGACGGCGCCATCAGCGGCACCGCGTCGACCATGGAAGCGCCTACCGGCGACAGC
GAAGTCAGCAGCTCGCCGACCGAGAGCGAAGCCAGCCTGGAAACGCCGGCAGCCGCCGACAGCAGCTCTGACAATAGCGA
CAGCGATTGGAGTTTCGACGATATCTCGCGCAGCGCGAAAAGCTCGGACGATGAAGACGCGCGGCCGCAGCTGGAAGCGC
ATGAATCGACGCTGCGCGAACATCTGCTGCAGCAGATGCGCGAAGCCATGCGCGACTTGCGCGACCGCGCGCTGGTCGAG
CTCGTGATCGATGCGCTGGACGATAACGGTTACCTGGAAGAGTCGCTGGAAGAAATCCTGGAGCGTTTGCCGCCTGAGCT
GGAGATCGCCCTCGAAGAGCTGTCGATGGCGCTGAAGATGGTGCAGAGCTTCGATCCGGCCGGGGTCGGCGCGCGCAACG
CGCCGGAATGCCTGGGCTTGCAGATCAAGCGTTTTGTCAAAGTGCCATTCGTCACGCGCCGCCTGGCGTTGGCGATTGTG
CAAGAACATCTGGTGCTGTTTGCGCAGCGCGATTTCAATAAAATCAAGAAAGCCCTGGATTGCGACGACGAGGACCTGCG
TGAAGCGCAAACCGTCATCAAGCAGTGCAATCCTCATCCCGGCGCGCCCTTCGCTGGCAACGCCTCCGACTATGTGGTGC
CGGACGTGATCGTCAGGCGCAGCAAGCAAGGCTGGCAGGTGATGCTGAACAATGACGTCATGCCAAGACTGCGGGTAAAT
GTCCTGTATGCCAACATTCTCAAGCAAAGCAAGGGCGACGGCGCACTCACTTCGCAGCTACAGGAAGCCAAGTGGCTGAT
CAAGAATATGCGGCAGCGCTTCGACACCATTTTGCGCGTTGCACAAGCGATTGTAGAACGTCAAAGGAACTTCTTTTCCC
ACGGCGCGGTCGCCATGCGCCCGCTTGTGTTGCGTGAAATAGCTGATACACTGGGTCTACACGAGAGTACTATTTCACGT
GTGACCACTCAGAAATACATGCTCACTCCCCACGGGATGTTTGAACTAAAGTATTTCTTCGGCAGCCATGTTGCTACTGA
GGCAGGTGGAGAGGCTTCCTCAACAGCAATCAGGGCACTCATTAAGCAACTCATAGGAGCGGAAGATTCAAGAAATCCTT
TCTCTGACAGCAAGATTGCCGACATGCTTGCGGAACAAGGTATGGTGGTCGCTCGCCGCACCGTCGCAAAATATCGCGAA
GCACTAAAAATTCCGTCTGTTAATCTGCGCAAGGCCTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-323)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(336-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127PYS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

59.562

100

0.606

Multiple sequence alignment