Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CAter10_RS18530 Genome accession   NZ_CP013233
Coordinates   4044453..4045940 (-) Length   495 a.a.
NCBI ID   WP_061534578.1    Uniprot ID   A0A127QNL9
Organism   Collimonas arenae strain Ter10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4039453..4050940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAter10_RS18520 (CAter10_4318) - 4040354..4043278 (-) 2925 WP_061534577.1 ribonucleoside-diphosphate reductase subunit alpha -
  CAter10_RS18525 (CAter10_4319) ampD 4043800..4044372 (-) 573 WP_236905414.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CAter10_RS18530 (CAter10_4320) pilR 4044453..4045940 (-) 1488 WP_061534578.1 sigma-54-dependent transcriptional regulator Regulator
  CAter10_RS18535 (CAter10_4321) - 4046019..4047740 (-) 1722 WP_061534579.1 sensor histidine kinase -
  CAter10_RS18540 (CAter10_4322) - 4047826..4048143 (-) 318 WP_335340170.1 PP0621 family protein -
  CAter10_RS18545 (CAter10_4323) - 4048091..4048900 (-) 810 WP_061534581.1 cytochrome C assembly family protein -
  CAter10_RS18550 (CAter10_4326) ffh 4049271..4050636 (+) 1366 Protein_3767 signal recognition particle protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 53469.47 Da        Isoelectric Point: 5.0864

>NTDB_id=160887 CAter10_RS18530 WP_061534578.1 4044453..4045940(-) (pilR) [Collimonas arenae strain Ter10]
MTSPRILVVDDEAHLRELLEIALVKMGLDVDSAENLTVARARLAQHDYALILTDMRLPDGLGIELVREVTCGEKVIPIAV
ITAYGSADNAVMALKAGAFDYLSKPVALDQLRLMVQSALRIGKPAEQNRPQPDARVRGGPGLRLIGQSAAMQELRTQIVR
LARSMAPVAITGESGSGKELAARDIHALSPRADKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADDRDGFFQAANGGTL
MLDEVADLPLAMQVKLLRAIQERRVRKVGATAEEAVDVRLISATHQNLSECVESGRFRQDLYYRLNVIELKLPPLRERLD
DISLLVAAILGRLSVFAPQAEQASLTPAALEALRAYAFPGNVRELENILERALAFANDGLIEVADLGLKGVAGARPAEAS
MFDDGEIDALAGVGAPIASAAMTASETAVAGAGMQRAGLELPPSLPDYLDDIERDVIRQALARTHFNRTKAADLLGISFR
QLRYRMQRLSIHEQD

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=160887 CAter10_RS18530 WP_061534578.1 4044453..4045940(-) (pilR) [Collimonas arenae strain Ter10]
ATGACTTCACCTCGTATTCTGGTCGTTGATGACGAAGCCCATCTGCGCGAATTGCTGGAAATTGCACTGGTCAAAATGGG
GCTTGACGTCGACAGCGCCGAAAACCTGACCGTAGCGCGCGCCCGTTTGGCGCAGCACGACTATGCGCTGATCCTGACCG
ATATGCGCCTGCCGGACGGGCTGGGGATCGAACTCGTACGCGAAGTCACCTGCGGCGAAAAGGTCATACCGATCGCGGTG
ATTACCGCCTATGGCAGCGCCGACAATGCCGTCATGGCGTTAAAGGCCGGCGCTTTCGATTATCTGTCGAAACCGGTGGC
GCTCGATCAACTGCGTTTGATGGTGCAGTCGGCATTGCGCATCGGGAAGCCGGCCGAGCAGAACCGTCCGCAGCCGGATG
CGCGGGTCCGTGGCGGCCCCGGCTTGCGCCTGATCGGCCAGTCGGCGGCGATGCAGGAGTTGCGCACCCAGATAGTCCGG
TTGGCGCGCAGCATGGCGCCGGTGGCGATCACCGGCGAGTCCGGTAGCGGCAAGGAACTGGCTGCACGCGATATTCATGC
ACTCAGTCCGCGCGCCGACAAACCCTTCGTTGCCGTCAATTGCGGTGCTATCCCGGAGGCCTTGATGGAGGCCGAGTTCT
TTGGCTATCGCAAAGGCGCTTTCACCGGCGCTGCCGACGATCGCGACGGTTTCTTTCAGGCCGCCAACGGCGGCACCCTC
ATGTTGGACGAAGTCGCCGACCTGCCGTTGGCGATGCAGGTCAAGTTGCTGCGCGCAATCCAGGAGCGGCGAGTACGCAA
AGTCGGCGCGACGGCAGAGGAGGCGGTTGACGTTCGTTTGATCAGCGCCACCCACCAGAATCTGTCCGAGTGTGTCGAAT
CAGGTAGATTTCGACAGGATTTGTACTATCGTTTGAATGTCATTGAATTAAAACTGCCGCCGTTGCGGGAACGACTGGAC
GATATCAGCCTGCTGGTAGCTGCAATTCTGGGACGTTTATCAGTGTTTGCGCCGCAGGCAGAACAGGCCAGCCTGACGCC
GGCAGCATTGGAGGCGTTGCGGGCCTATGCGTTTCCCGGCAATGTGCGTGAACTGGAAAACATCCTGGAGCGCGCATTGG
CGTTTGCCAATGACGGCTTGATCGAAGTGGCCGATCTTGGGTTGAAGGGAGTGGCTGGCGCCAGGCCCGCCGAGGCATCG
ATGTTCGACGATGGCGAGATCGATGCCTTGGCTGGTGTTGGTGCTCCAATCGCCAGCGCCGCGATGACGGCCTCCGAAAC
GGCTGTAGCGGGTGCGGGGATGCAGCGCGCCGGCCTGGAGTTACCGCCGTCGCTGCCAGATTATCTCGATGACATCGAAC
GCGATGTCATCCGGCAAGCATTGGCACGTACGCACTTCAACCGTACCAAGGCGGCTGATCTGCTCGGCATCAGCTTCCGC
CAGTTGCGCTACAGGATGCAGCGATTGTCGATTCACGAACAGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(449-489)

Sigma-54 interaction domain (Sigma54_activat)

(144-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127QNL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

52.13

99.596

0.519
  pilR Acinetobacter baumannii strain A118

43.238

98.586

0.426

Multiple sequence alignment