Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CAter10_RS12435 Genome accession   NZ_CP013233
Coordinates   2681641..2682447 (+) Length   268 a.a.
NCBI ID   WP_061533651.1    Uniprot ID   -
Organism   Collimonas arenae strain Ter10     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2676641..2687447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAter10_RS12410 (CAter10_2901) - 2676745..2677484 (-) 740 Protein_2532 3-ketoacyl-ACP reductase -
  CAter10_RS24570 (CAter10_2903) phaC 2677576..2679350 (-) 1775 Protein_2533 class I poly(R)-hydroxyalkanoic acid synthase -
  CAter10_RS12420 (CAter10_2905) - 2679411..2679665 (+) 255 WP_061533648.1 hypothetical protein -
  CAter10_RS12425 (CAter10_2906) pgeF 2679682..2680461 (-) 780 WP_061533649.1 peptidoglycan editing factor PgeF -
  CAter10_RS12430 (CAter10_2907) - 2680532..2681569 (-) 1038 WP_061533650.1 RluA family pseudouridine synthase -
  CAter10_RS12435 (CAter10_2908) comL 2681641..2682447 (+) 807 WP_061533651.1 outer membrane protein assembly factor BamD Machinery gene
  CAter10_RS12440 (CAter10_2909) - 2682506..2683564 (-) 1059 WP_061533652.1 glycosyltransferase family 4 protein -
  CAter10_RS12445 (CAter10_2910) - 2683546..2684406 (-) 861 WP_061533653.1 UDP-2,3-diacylglucosamine diphosphatase -
  CAter10_RS12450 (CAter10_2911) - 2684403..2685170 (-) 768 WP_061533654.1 GNAT family N-acetyltransferase -
  CAter10_RS12455 (CAter10_2912) - 2685451..2685912 (-) 462 WP_061533655.1 hypothetical protein -
  CAter10_RS12460 (CAter10_2915) - 2686188..2687258 (+) 1071 WP_164840446.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30621.65 Da        Isoelectric Point: 7.9569

>NTDB_id=160884 CAter10_RS12435 WP_061533651.1 2681641..2682447(+) (comL) [Collimonas arenae strain Ter10]
MQKRLLKLAAVAFALSLSACGLLPDKVDETANWSAPRLYSEAKDEMNSGGYDKAIKYFEKLESRYPFGTYAQQAQMDIAY
AHYRQGEQPEALAAIDRFIKLHPNHPNVDYMYYLRGLVNFNDKVSIFDFLASEDATERDPKAARDAFDAFKQVVVRFPDS
TYAPDSLARMKYLVNALAQYDVHVAGYYYRRGAYVAAANRAESAIQEYRDAPAVEEALFIMVRSYDALGLTQLRDDAERV
MKKNYPNSRFYNGGGQVVAKAPWWKFWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=160884 CAter10_RS12435 WP_061533651.1 2681641..2682447(+) (comL) [Collimonas arenae strain Ter10]
ATGCAAAAAAGACTCTTAAAACTAGCTGCTGTCGCATTCGCTCTATCCCTATCCGCGTGTGGCTTATTGCCAGACAAGGT
CGATGAAACCGCAAACTGGTCTGCGCCCCGATTATACTCGGAGGCCAAGGACGAAATGAACAGTGGTGGCTATGACAAGG
CAATTAAGTACTTTGAAAAGCTGGAGTCCCGCTATCCGTTTGGCACTTATGCGCAACAGGCGCAGATGGACATTGCCTAC
GCCCACTACCGCCAAGGCGAGCAGCCTGAAGCGCTGGCCGCTATCGATCGCTTCATCAAATTGCATCCAAATCACCCCAA
TGTGGACTATATGTACTACTTGCGCGGCTTGGTCAATTTTAACGACAAGGTCAGCATTTTCGACTTCCTTGCTAGCGAAG
ATGCTACCGAGCGCGATCCAAAGGCTGCGCGCGACGCCTTTGATGCCTTCAAGCAAGTCGTAGTGCGTTTCCCGGACAGC
ACCTACGCTCCGGATTCGCTGGCGCGCATGAAGTATCTGGTGAATGCATTGGCTCAGTATGATGTTCACGTGGCGGGCTA
CTACTATCGTCGCGGCGCCTACGTTGCGGCAGCCAACCGCGCAGAGAGCGCGATCCAGGAATACCGGGATGCGCCTGCGG
TTGAAGAAGCGCTGTTCATCATGGTCAGGTCATACGATGCACTGGGCCTGACCCAGCTGCGCGACGACGCCGAACGCGTC
ATGAAGAAAAACTACCCGAACAGCCGGTTCTATAACGGTGGCGGACAAGTGGTCGCAAAAGCACCGTGGTGGAAATTCTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(36-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

47.778

100

0.481
  comL Neisseria gonorrhoeae MS11

47.778

100

0.481

Multiple sequence alignment